Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq266 163 2e-35 seq24 145 6e-30 seq12660 96.9 3e-15 seq2327 87.8 2e-12 >seq266 Length=263831 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||||||||| || ||||| | || | || || ||| | | Sbjct 46922 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 46863 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | ||| ||||| |||||||| || ||||||||||| |||||| Sbjct 46862 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 46803 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||||||||| ||| | | ||| | |||||| ||| Sbjct 46802 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46743 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||| | || | ||| | |||||| | || ||| Sbjct 46742 ATTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGGT 46695 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||||||||| || ||||| | || | || || ||| | | Sbjct 47150 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 47091 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | ||| ||||| |||||||| || ||||||||||| |||||| Sbjct 47090 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 47031 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||||||||| ||| | | ||| | |||||| ||| Sbjct 47030 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46971 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||| | || | ||| | |||||| | || ||| Sbjct 46970 ATTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGGT 46923 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || |||||||||||||| || ||||| |||| | || || ||| | | Sbjct 46694 ATGCAAATATTCGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46635 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | ||| ||||| |||||||| || ||||| ||||| |||||| Sbjct 46634 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 46575 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||||||||| ||| | | ||| | |||||| ||| Sbjct 46574 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46515 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||| | || | ||| | |||||| | || ||| Sbjct 46514 ATTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGGT 46467 Score = 154 bits (170), Expect = 1e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||||||||| || ||||| |||| | || || ||| | | Sbjct 46466 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46407 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | ||| ||||| |||||||| || ||||| ||||| |||||| Sbjct 46406 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 46347 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||||||||| ||| | | || | ||||| ||| Sbjct 46346 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACACTGAGTGATTATAAC 46287 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||||||||||| || || | ||| ||||| | ||||| Sbjct 46286 ATTCAAAAAGAGTCTACTCTCCATCTAGTTCTTCGATT 46249 >seq24 Length=448628 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || |||||||| |||| | || || ||| | | Sbjct 61931 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 61990 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | ||| ||||||||||||||||| ||||||||||| || ||| Sbjct 61991 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAA 62050 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || || ||||| ||| | || | ||||||||| Sbjct 62051 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGATTACAAC 62110 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||||||| | ||| | ||| | ||||| | |||||| Sbjct 62111 ATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGGT 62158 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || |||||||| ||||| | || || ||| | | Sbjct 62387 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62446 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | ||| |||||||||||||| || ||||||||||| |||||| Sbjct 62447 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62506 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || || ||||| ||| | || | || ||||| Sbjct 62507 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62566 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||||||| | ||| | ||| | ||||| | |||||| Sbjct 62567 ATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGGT 62614 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || |||||||| ||||| | || || ||| | | Sbjct 62615 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62674 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | ||| ||||||||||||||||| ||||||||||| || || Sbjct 62675 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAG 62734 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || || ||||||||| | || || || |||||| Sbjct 62735 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAGGATGGGAGAACTCTCAGTGACTACAAC 62794 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||||||||| ||| | ||| | || | |||||| | || || Sbjct 62795 ATTCAAAAAGAATCTACCCTTCATCTTGTCCTTCGATTGAGAGGTGG 62841 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || |||||||| |||| | || || ||| | | Sbjct 62159 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 62218 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | ||| |||||||||||||| || ||||||||||| |||||| Sbjct 62219 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62278 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || || ||||| ||| | || | || ||||| Sbjct 62279 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62338 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||||||| | ||| | ||| | ||||| | |||||| Sbjct 62339 ATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGGT 62386 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 |||||||| || |||||||||||| | || ||||| ||||| |||||||| ||| | Sbjct 61805 GGTATTCCGCCAGATCAACAACGTTTAATCTTTGCTGGCAAGCAGTTAGAAGATGGTAGA 61864 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || | ||||||||||||||||||||||||||| | ||| | ||| | ||||| | Sbjct 61865 ACATTAAGTGATTACAACATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGA 61924 Query 22441 GGAGGT 22446 |||||| Sbjct 61925 GGAGGT 61930 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| ||||| ||||||||||| || ||||| | ||| | ||||| ||| | Sbjct 61378 AAGATGCAAATCTTTGTGAAAACTTTAACTGGCAAAACTATTACTTTAGAAGTAGAAGCT 61437 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATT 22326 ||||||| | || || | ||| ||| |||||||| || ||||||||| Sbjct 61438 GCCGATACTATTGAGAATGTTAAAGCAAAGATTCAAGATAAAGAGGGTATT 61488 >seq12660 Length=10627 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| ||||| ||||| | || |||||||| |||| | ||||| ||| | | Sbjct 9975 ATGAAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACATTAGAAGTTGAACCTGCT 9916 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| |||||||||||||| || ||| || ||| || ||| Sbjct 9915 GATACAATTGAAAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTTTTTTACCAGACCAA 9856 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || | ||||| ||| | | || | | ||||| Sbjct 9855 CAGCGTTTAATTTTTGCTGGTAAGGAATTAGAAGATGATAGAACATTAAGTTACTACAAT 9796 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||| || | ||| | ||| | ||||| | |||||| Sbjct 9795 GTTCAAAAAGAATCTACTCTTCATCTTGTTCTTCGATTAAGAGGAGGT 9748 >seq2327 Length=102395 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||| || || ||||||||||| || || ||||| ||||| ||||| || || Sbjct 35000 AAAATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGACTTATCTTTGCTGGAAAG 34941 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 |||||||| ||| | || | ||||| ||||||||||| || || || | ||| Sbjct 34940 CAGTTAGAAGATGGAAGGACATTAAGTGATTATAACATTCAAAAGGAGTCTACACTTCAT 34881 Query 22423 TTAGTTTT 22430 | ||||| Sbjct 34880 CTCGTTTT 34873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419621005561540