Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq24 150 3e-31 seq266 143 5e-29 seq2327 127 4e-24 seq12660 102 2e-16 >seq24 Length=448628 Score = 150 bits (166), Expect = 3e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| |||||||| ||||| ||||| | ||| || |||||||||| Sbjct 62138 CAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTACCATCTTCTA 62079 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | ||||| || || || || | | |||||||| |||||||| |||||||||||||||| Sbjct 62078 ATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAA 62019 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || || || ||| || || || || || | ||| || || || ||||||||||| | Sbjct 62018 TTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTAC 61959 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||| || || ||||| ||||| Sbjct 61958 CAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || |||||||| ||||| || || ||| || |||||||| |||| Sbjct 62822 CAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCCTCTA 62763 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | ||||| || || || || | | || ||||| |||||||| |||||||||||||||| Sbjct 62762 ATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAA 62703 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || || || ||| || || || || || | ||| || || || ||||||||||| | Sbjct 62702 TTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTAC 62643 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||| || || ||||| ||||| Sbjct 62642 CAGTAAGGGTTTTTACAAATATTTGCAT 62615 Score = 132 bits (146), Expect = 9e-26 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| |||||||| || || || || | ||| || |||||||||| Sbjct 62366 CAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTACCATCTTCTA 62307 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | ||||| || || || || | | ||||| || |||||||| ||||| |||||||||| Sbjct 62306 ATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAA 62247 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || || || ||| || || || || || | ||| || || || ||||||||||| | Sbjct 62246 TTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTAC 62187 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||| || || ||||| ||||| Sbjct 62186 CAGTAAGGGTTTTCACAAATATTTGCAT 62159 Score = 132 bits (146), Expect = 9e-26 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| |||||||| || || || || | ||| || |||||||||| Sbjct 62594 CAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTACCATCTTCTA 62535 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | ||||| || || || || | | ||||| || |||||||| ||||| |||||||||| Sbjct 62534 ATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAA 62475 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || || || ||| || || || || || | ||| || || || ||||||||||| | Sbjct 62474 TTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTAC 62415 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||| || || ||||| ||||| Sbjct 62414 CAGTAAGGGTTTTTACAAATATTTGCAT 62387 >seq266 Length=263831 Score = 143 bits (158), Expect = 5e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || ||||||||||| |||||||||||| || || || |||||||||||||| Sbjct 46491 GTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTG 46550 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || || || || || | | |||||| || ||||| || ||||| |||||||| || || Sbjct 46551 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTT 46610 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || || || || || || || || | ||| || ||||| ||||||||||| || || Sbjct 46611 AGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGT 46670 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 | || || |||||||| ||||| Sbjct 46671 TAAAGTTTTAACGAATATTTGCAT 46694 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || ||||||||||| |||||||||||| || || || |||||||||||||| Sbjct 46719 GTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTG 46778 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || || || || || | | |||||| || |||||||| ||||| |||||||| || || Sbjct 46779 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTT 46838 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || || || || || || || || | ||| || ||||| || |||||||| || || Sbjct 46839 AGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGT 46898 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 | || || || ||||| ||||| Sbjct 46899 TAAAGTTTTAACAAATATTTGCAT 46922 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || ||||||||||| |||||||||||| || || || |||||||||||||| Sbjct 46947 GTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTG 47006 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || || || || || | | |||||| || |||||||| ||||| |||||||| || || Sbjct 47007 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTT 47066 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || || || || || || || || | ||| || ||||| || |||||||| || || Sbjct 47067 AGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGT 47126 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 | || || || ||||| ||||| Sbjct 47127 TAAAGTTTTAACAAATATTTGCAT 47150 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || ||||||||||| ||||||||||| ||||| || |||||||||||||| Sbjct 46264 TGGAGAGTAGACTCTTTTTGAATGTTATAATCACTCAGTGTTCTGCCATCTTCTAACTGT 46323 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | | |||||| || ||||| || ||||| |||||||| || || Sbjct 46324 TTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTA 46383 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || || || || || | ||| || ||||| ||||||||||| || || Sbjct 46384 GCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTT 46443 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || ||||| ||||| Sbjct 46444 AAAGTTTTAACAAATATTTGCAT 46466 Score = 84.2 bits (92), Expect = 4e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| || |||||||| ||||| || || || || || || || | ||| |||||| Sbjct 48563 CCTTCTTTATCTTGAATTTTTGCTTTCACATTTTCAATAGTATCAGCAGCTTCAACTTCC 48622 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTATA 68473 |||||||||||||| || || || || || || || ||||||||| | ||| ||| Sbjct 48623 AAGGTGATGGTTTTCCCTGTTAGAGTTTTAACAAAAATCTGCATTTTTTTATAATA 48678 >seq2327 Length=102395 Score = 127 bits (140), Expect = 4e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || ||||| ||||| ||||||||||| | |||||| ||||||||||||||| Sbjct 34882 TGAAGTGTAGACTCCTTTTGAATGTTATAATCACTTAATGTCCTTCCATCTTCTAACTGC 34941 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || |||| ||| ||||| |||||||| ||||| || |||||||| || Sbjct 34942 TTTCCAGCAAAGATAAGTCGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGAATTTTA 35001 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTG 68406 || || || |||||| || ||||||| Sbjct 35002 GCTTTAACATTCTCGATTGTATCTGCTG 35029 >seq12660 Length=10627 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 68273 TTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATAT 68332 |||||| || || || || ||| || || ||| |||||||| ||| || || || | Sbjct 9106 TTTTTGAATATTGTAGTCACTGAGAGTTCTTTCATTTTCTAACTCCTTACCAGCAAAAAA 9165 Query 68333 GAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTC 68392 | |||||||| || |||||| ||||| ||||| ||||| || || || ||| || Sbjct 9166 CAAACTTTGTTGATCTAGTGGAACACCTTCTTTGTCGTGAATTTTAGCTTTCACGTTGTC 9225 Query 68393 GATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || || || || | ||| || || || ||||||||||| || || ||||| || || || Sbjct 9226 AATTGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAA 9285 Query 68453 TATCTGCAT 68461 ||| | ||| Sbjct 9286 TATATTCAT 9294 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || |||||||| | || || | | ||| || ||||||||| Sbjct 9768 CAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTTAATGTTCTATCATCTTCTA 9827 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | | ||| || || || || | | |||||||| ||| || ||||| |||||||||| Sbjct 9828 ATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAACCTTCTTTGTCTTGAA 9887 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || || || ||| || || || || || | ||| ||||| || ||||||||||| | Sbjct 9888 TTTTAGCTTTTACGTTTTCAATTGTATCAGCAGGTTCAACTTCTAATGTGATGGTTTTAC 9947 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||| || || ||||| | ||| Sbjct 9948 CAGTAAGGGTTTTCACAAATATTTTCAT 9975 Score = 87.8 bits (96), Expect = 3e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || |||||||| | || || | | ||| || ||||||||| Sbjct 9315 CAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTTAATGTTCTATCATCTTCTA 9374 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | | ||| || || || || | | |||||||| ||| || |||| |||||||||| Sbjct 9375 ATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAACCTTTTTTGTCTTGAA 9434 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || || ||| || || || || || ||| ||||| || ||||||||||| | Sbjct 9435 TTCGAGCTTTTACGTTTTCAATTGTATCAGCAAGTTCAACTTCTAATGTGATGGTTTTAC 9494 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||| || || ||||| ||||| Sbjct 9495 CAGTAAGGGTTTTCACAAATATTTGCAT 9522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921381441823520