Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq24 118 9e-22 seq266 109 5e-19 seq12660 91.5 1e-13 >seq24 Length=448628 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || | ||| | ||| | || ||||||||||||||||||||||| Sbjct 62160 ATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCA 62101 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || | | |||||| | ||| |||||||| | || | |||||||||||| || Sbjct 62100 CTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGT 62041 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || ||||| | |||| || || | | ||| Sbjct 62040 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 61981 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || ||||| ||||| || ||||| Sbjct 61980 ACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || | ||| | ||| | || |||||||||||||| ||||| || Sbjct 62616 ATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCA 62557 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || | | |||||| | ||| |||||||| | || | ||||||||| || || Sbjct 62556 CTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGT 62497 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| || ||||| | |||| || || | | ||| Sbjct 62496 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 62437 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || ||||||||||| || ||||| Sbjct 62436 ACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || | ||| | ||| | || |||||||||||||| ||||| || Sbjct 62388 ATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCA 62329 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || | | |||||| | ||| |||||||| | || | ||||||||| || || Sbjct 62328 CTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGT 62269 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| || ||||| | |||| || || | | ||| Sbjct 62268 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 62209 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || ||||| ||||| || ||||| Sbjct 62208 ACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||||||||||||||| || || | ||| | ||| || | ||| |||||| Sbjct 62811 GTAGATTCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCCTCTAATTGCTTACCA 62752 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | |||||| ||||| || ||||| ||||| ||||| ||| || |||| Sbjct 62751 GCAAAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTTAGCTTTT 62692 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | ||| || || | || | ||||| || || || ||| Sbjct 62691 ACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTACCAGTAAGGGTT 62632 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| || ||||| Sbjct 62631 TTTACAAATATTTGCAT 62615 >seq266 Length=263831 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||||| ||| | ||||| |||||||||||||| ||||| |||| || | |||||| Sbjct 46257 AACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTCAGTGTTCTGCCATCTTC 46316 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||||||||||| | || | ||| ||||| || || || || ||||||||||| Sbjct 46317 TAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTG 46376 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || || ||| | | |||| || || | | |||||| |||| || | ||||| Sbjct 46377 GATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTT 46436 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | |||||| ||||| || ||||| Sbjct 46437 GCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || |||||||||||||| |||||||||| || | |||||| | ||||||||| Sbjct 46726 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 46785 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | ||| ||||| || || ||||| ||||||||||| || || ||| Sbjct 46786 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTC 46845 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | ||| || |||| || | |||||||| || | |||| Sbjct 46846 ACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTT 46905 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 46906 TTAACAAATATTTGCAT 46922 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || |||||||||||||| |||||||||| || | |||||| | ||||||||| Sbjct 46954 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 47013 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | ||| ||||| || || ||||| ||||||||||| || || ||| Sbjct 47014 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTC 47073 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | ||| || |||| || | |||||||| || | |||| Sbjct 47074 ACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTT 47133 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 47134 TTAACAAATATTTGCAT 47150 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || |||||||||||||| |||||||||| || | |||||| | ||||||||| Sbjct 46498 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 46557 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | ||| ||||| || || || || ||||||||||| || || ||| Sbjct 46558 GCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTC 46617 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | |||||| |||| || | |||||||| || | |||| Sbjct 46618 ACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTT 46677 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 46678 TTAACGAATATTTGCAT 46694 >seq12660 Length=10627 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || | ||| | ||| | |||||||||||||||| ||||| | Sbjct 9746 ATACCTCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAA 9805 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || | | |||||| | || |||||||| | || | |||||||||||| || Sbjct 9806 CTTAATGTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGT 9865 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||||||||| ||| || ||||| | ||||| || || | | ||| Sbjct 9866 AAAAAACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGCAGGTTCA 9925 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || ||||| ||||| || | ||| Sbjct 9926 ACTTCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTTCAT 9975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420027301964592