Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq24 114 3e-20 seq266 89.7 1e-12 seq14000 87.8 4e-12 seq3686 86.0 1e-11 seq103 86.0 1e-11 seq5503 84.2 5e-11 seq5502 84.2 5e-11 seq765 84.2 5e-11 seq117 84.2 5e-11 >seq24 Length=448628 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 || ||| || ||||||| ||| ||||||||| ||||| ||||| | || | || Sbjct 62374 TCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTACC 62315 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 ||||||||||| || || || || || | |||||||||| ||| || |||||||| Sbjct 62314 ATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTT 62255 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 || || ||||| ||||| ||||| || || | ||| | ||| || || | |||||| Sbjct 62254 GTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGAT 62195 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || ||||| ||||| Sbjct 62194 GGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 || ||| || ||||||| ||| ||||||||| ||||| ||||| | || | || Sbjct 62602 TCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTACC 62543 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 ||||||||||| || || || || || | |||||||||| ||| || |||||||| Sbjct 62542 ATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTT 62483 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 || || ||||| ||||| ||||| || || | ||| | ||| || || | ||||| Sbjct 62482 GTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGAT 62423 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || ||||| ||||| Sbjct 62422 GGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 || ||| || ||||||| ||| ||||||||| || || || || | || | || Sbjct 62146 TCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTACC 62087 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 ||||||||||| || || || || || | ||||||||| ||| || ||||| || Sbjct 62086 ATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTT 62027 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 || || ||||| ||||| ||||| || || | ||| | ||| || || | |||||| Sbjct 62026 GTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGAT 61967 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || ||||| ||||| Sbjct 61966 GGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 >seq266 Length=263831 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||| || ||||| |||||||| ||||| |||| ||| | ||| ||||| Sbjct 48563 CCTTCTTTATCTTGAATTTTTGCTTTCACATTTTCAATAGTATCAGCAGCTTCAACTTCC 48622 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 | ||||| || ||||| || ||||| || || || ||||||||| | |||| Sbjct 48623 AAGGTGATGGTTTTCCCTGTTAGAGTTTTAACAAAAATCTGCATTTTTTTAT 48674 >seq14000 Length=7891 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 194917 CATAGCCAGGATGGCCGAGTTGGTTAAGGCGATCGCCTCAAGAGCGATTGGATGTTATGT 194976 |||| ||||||||||||||| |||||||||| | | || |||| | | |||| || |||| Sbjct 2658 CATAACCAGGATGGCCGAGT-GGTTAAGGCGTTGGACTTAAGATCCAATGGACGT-ATGT 2601 Query 194977 CCGCGTAGGTTCGAGCCCTACTTCTGG 195003 |||||| ||||||| ||| |||||||| Sbjct 2600 CCGCGTGGGTTCGAACCCCACTTCTGG 2574 >seq3686 Length=72035 Score = 86.0 bits (94), Expect = 1e-11 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 194918 ATAGCCAGGATGGCCGAGTTGGTTAAGGCGATCGCCTCAAGAGCGATTGGATGTTATGTC 194977 ||| ||||||||||||||| |||||||||| | | || |||| | | |||| || ||||| Sbjct 51231 ATAACCAGGATGGCCGAGT-GGTTAAGGCGTTGGACTTAAGATCCAATGGACGT-ATGTC 51288 Query 194978 CGCGTAGGTTCGAGCCCTACTTCTGG 195003 ||||| ||||||| ||| |||||||| Sbjct 51289 CGCGTGGGTTCGAACCCCACTTCTGG 51314 >seq103 Length=338006 Score = 86.0 bits (94), Expect = 1e-11 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 194918 ATAGCCAGGATGGCCGAGTTGGTTAAGGCGATCGCCTCAAGAGCGATTGGATGTTATGTC 194977 ||| ||||||||||||||| |||||||||| | | || |||| | | |||| || ||||| Sbjct 281407 ATAACCAGGATGGCCGAGT-GGTTAAGGCGTTGGACTTAAGATCCAATGGACGT-ATGTC 281464 Query 194978 CGCGTAGGTTCGAGCCCTACTTCTGG 195003 ||||| ||||||| ||| |||||||| Sbjct 281465 CGCGTGGGTTCGAACCCCACTTCTGG 281490 >seq5503 Length=48954 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||| |||||||| ||||| || |||||||||| ||| | ||||| || Sbjct 3049 CCTTCTTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGCAGCCTCTACCTCA 2990 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| || | || || || ||||||||||| Sbjct 2989 AGGGTAATAGTCTTCCCTGTTAAGGTTTTAACAAATATCTGCAT 2946 >seq5502 Length=48965 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 194917 CATAGCCAGGATGGCCGAGTTGGTTAAGGCGATCGCCTCAAGAGCGATTGGATGTTATGT 194976 |||| ||||||||||||||| |||||||||| | | || |||| | | |||| || |||| Sbjct 14564 CATA-CCAGGATGGCCGAGT-GGTTAAGGCGTTGGACTTAAGATCCAATGGACGT-ATGT 14620 Query 194977 CCGCGTAGGTTCGAGCCCTACTTCTGG 195003 |||||| ||||||| ||| |||||||| Sbjct 14621 CCGCGTGGGTTCGAACCCCACTTCTGG 14647 >seq765 Length=179793 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 194916 GCATAGCCAGGATGGCCGAGTTGGTTAAGGCGATCGCCTCAAGAGCGATTGGATGTTATG 194975 |||| |||||||||||||||| |||||||||| | | ||||||| | |||| | ||| Sbjct 98867 GCAT-GCCAGGATGGCCGAGT-GGTTAAGGCGTTGGACTCAAGATCCGATGGACAT-ATG 98923 Query 194976 TCCGCGTAGGTTCGAGCCCTACTTCTGGCACTGTT 195010 ||||||| ||||||| ||| |||||||| | |||| Sbjct 98924 TCCGCGTGGGTTCGATCCCCACTTCTGGTAATGTT 98958 >seq117 Length=328938 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 194918 ATAG-CCAGGATGGCCGAGTTGGTTAAGGCGATCGCCTCAAGAGCGATTGGATGTTATGT 194976 |||| ||||||||||||||| |||||||||| | | || |||| | | |||| || |||| Sbjct 178723 ATAGACCAGGATGGCCGAGT-GGTTAAGGCGTTGGACTTAAGATCCAATGGACGT-ATGT 178780 Query 194977 CCGCGTAGGTTCGAGCCCTACTTCTGG 195003 |||||| ||||||| ||| |||||||| Sbjct 178781 CCGCGTGGGTTCGAACCCCACTTCTGG 178807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179338268841048