Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq24 125 7e-24 seq266 113 5e-20 seq2327 87.8 2e-12 seq12660 82.4 8e-11 >seq24 Length=448628 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||||| ||| || ||||||| || |||||||||||||||||||| || | Sbjct 62841 CCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTG 62782 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | | || || | ||||| || ||| |||| | ||||||||||| || ||| Sbjct 62781 AGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 62722 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| ||||| ||||| || | |||||| | | || || Sbjct 62721 ATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 62662 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||| | ||| || || || | |||||||| || |||||||| Sbjct 62661 TCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62615 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||| ||| || ||||||| || ||||||||||||||||||||||| | || | Sbjct 62148 AATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTA 62089 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | ||||| || ||| |||| | ||||| ||||| || ||||| ||||| Sbjct 62088 CCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCC 62029 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| ||||| || | |||||| | | || || |||| || Sbjct 62028 TTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTG 61969 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || | ||||| || || |||||||| Sbjct 61968 ATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||| ||| || ||||||| || |||||||||||||| ||||| || | || | Sbjct 62604 AATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTA 62545 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | ||||| || ||| |||| | ||||| || || || ||||| |||||| Sbjct 62544 CCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCT 62485 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| ||||| || | |||||| | | || || |||| ||| Sbjct 62484 TTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTG 62425 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || | |||||||| || |||||||| Sbjct 62424 ATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||| ||| || ||||||| || |||||||||||||| ||||| || | || | Sbjct 62376 AATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTA 62317 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | ||||| || ||| |||| | ||||| || || || ||||| |||||| Sbjct 62316 CCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCT 62257 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| ||||| || | |||||| | | || || |||| || Sbjct 62256 TTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTG 62197 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || | ||||| || || |||||||| Sbjct 62196 ATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 >seq266 Length=263831 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| ||| || || |||| || || |||||||||||||| ||||| Sbjct 46467 ACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCT 46526 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | | ||||| | ||| || || ||| |||| | || || || || || || Sbjct 46527 CAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 46586 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || |||||||| ||||| | |||| ||||| ||| || | |||||| | | || | Sbjct 46587 GATACCTTCTTTGTCTTGGA-TTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGA 46645 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||| ||||| || |||||||| ||||| |||||||| Sbjct 46646 CCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| ||| || || |||| || || |||||||||||||| ||||| Sbjct 46695 ACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCT 46754 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | | ||||| | ||| || || ||| |||| | || || || || || || Sbjct 46755 CAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 46814 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| |||||||| ||||| | |||| ||||| ||| || | |||||| | | || | Sbjct 46815 AATACCTTCTTTGTCTTGGA-TTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAA 46873 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||| ||||| || |||||||| || || |||||||| Sbjct 46874 CCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| ||| || || |||| || || |||||||||||||| ||||| Sbjct 46923 ACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCT 46982 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | | ||||| | ||| || || ||| |||| | || || || || || || Sbjct 46983 CAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 47042 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| |||||||| ||||| | |||| ||||| ||| || | |||||| | | || | Sbjct 47043 AATACCTTCTTTGTCTTGGA-TTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAA 47101 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||| ||||| || |||||||| || || |||||||| Sbjct 47102 CCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 47150 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||| ||| |||||||| | || || |||||||||||||| ||||| | || | Sbjct 46249 AATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTCAGTGTTCTG 46308 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | ||| || || ||| |||| | || || || || || || || |||||| Sbjct 46309 CCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCT 46368 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | |||||| | | || || || | || Sbjct 46369 TTGTCTTGGA-TTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGT 46427 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| ||||| || |||||||| || || |||||||| Sbjct 46428 GATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 >seq2327 Length=102395 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || || || ||||||||||| ||||| | || | | ||||| Sbjct 34876 ACGAGATGAAGTGTAGACTCCTTTTGAATGTTATAATCACTTAATGTCCTTCCATCTTCT 34935 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | |||||| || ||| | || || || |||||||| || ||||| |||||||| ||||| Sbjct 34936 AACTGCTTTCCAGCAAAGATAAGTCGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTG- 34994 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATC 64383 | |||| ||||| ||| ||| | |||||| Sbjct 34995 AATTTTAGCTTTAACATTCTCGATTGTATC 35024 >seq12660 Length=10627 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||| ||| || ||||||| || ||||||||||||| ||||| | | || | Sbjct 9758 AATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTTAATGTTCTA 9817 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | | ||| || ||| |||| | ||||| ||||| || || |||||| Sbjct 9818 TCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAACCTTCT 9877 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| ||||| || | ||||||| | | || ||||||| || Sbjct 9878 TTGTCTTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGCAGGTTCAACTTCTAATGTG 9937 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || | ||||| || || |||| ||| Sbjct 9938 ATGGTTTTACCAGTAAGGGTTTTCACAAATATTTTCAT 9975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499514167867040