Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq24 188 5e-43 seq266 163 2e-35 seq12660 129 4e-25 >seq24 Length=448628 Score = 188 bits (208), Expect = 5e-43 Identities = 181/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 14946 TCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC 15005 || |||||||| ||||| | || | |||||||||||| |||||||| |||||||| || Sbjct 62845 TCAGCCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTC 62786 Query 15006 GCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 |||||| ||||| | || |||||||| || ||||| | || |||||||| ||||| Sbjct 62785 ACTGAGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGG 62726 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||||| ||||||||||| |||||| |||||| | || || ||||| | ||| Sbjct 62725 TGGAATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTC 62666 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || ||||||||||| || || ||||||||||| ||||||||| Sbjct 62665 AACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCATA 62614 Score = 168 bits (186), Expect = 5e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| | ||| | ||||||||| || |||||||| ||||||||||| || Sbjct 62157 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 62098 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | |||| | ||||||||||| || ||||| | || |||||||||||||| |||| Sbjct 62097 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGA 62038 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| |||||| | || || ||||| | ||| || Sbjct 62037 ATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 61978 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 61977 TCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATA 61930 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| | ||| | ||||||||| || |||||||| || ||||| || || Sbjct 62613 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62554 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | |||| | ||||||||||| || ||||| | || ||||||||||| || |||| Sbjct 62553 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62494 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| |||||| | || || ||||| | ||| || Sbjct 62493 ATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 62434 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||||||||| || || ||||||||||| ||||||||| Sbjct 62433 TCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCATA 62386 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| | ||| | ||||||||| || |||||||| || ||||| || || Sbjct 62385 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62326 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | |||| | ||||||||||| || ||||| | || ||||||||||| || |||| Sbjct 62325 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62266 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| |||||| | || || ||||| | ||| || Sbjct 62265 ATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 62206 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 62205 TCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATA 62158 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| | ||| | ||||||||| || |||||||| ||||||||||| || Sbjct 61929 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 61870 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | |||| | |||||||| || |||||||| | || ||||| ||||| || ||| Sbjct 61869 AATGTTCTACCATCTTCTAACTGCTTGCCAGCAAAGATTAAACGTTGTTGATCTGGCGGA 61810 Query 15070 ATTCCT 15075 || ||| Sbjct 61809 ATACCT 61804 >seq266 Length=263831 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | ||| | |||||||| || |||||||| ||||| |||||||| Sbjct 46696 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46755 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | |||||||| ||||| ||||| | |||||||| ||||| || |||| Sbjct 46756 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 46815 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||| ||| ||| | || |||||||| | ||| || Sbjct 46816 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACC 46875 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||||||| || || | |||||| ||||| ||||||||| Sbjct 46876 TCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCATA 46923 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | ||| | |||||||| || |||||||| ||||| |||||||| Sbjct 46924 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46983 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | |||||||| ||||| ||||| | |||||||| ||||| || |||| Sbjct 46984 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 47043 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||| ||| ||| | || |||||||| | ||| || Sbjct 47044 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACC 47103 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||||||| || || | |||||| ||||| ||||||||| Sbjct 47104 TCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCATA 47151 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | ||| | |||||||| || |||||||| ||||| ||||| || Sbjct 47152 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCACTC 47211 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | |||||||| ||||| ||||| | ||||||||||||||||| ||| Sbjct 47212 AGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGCTGTTGGTCTGGTGGG 47271 Query 15070 ATTCCT 15075 || ||| Sbjct 47272 ATACCT 47277 >seq12660 Length=10627 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| | ||| | |||||| ||||| |||||||| | ||||| | || Sbjct 9749 CCTCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTT 9808 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | |||| | |||||||||| || ||||| | || |||||||||||||| | | Sbjct 9809 AATGTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAA 9868 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 | ||||| ||||| |||||| |||||| |||| || ||||| | ||| || Sbjct 9869 AAACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGCAGGTTCAACT 9928 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT 15178 ||||| || ||||||||||| || || ||||| ||||| |||| ||||| Sbjct 9929 TCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTTCATAT 9977 Score = 118 bits (130), Expect = 8e-22 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 14953 CCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGA 15012 |||| |||| | ||| | |||||| ||||| |||||||| | ||||| | || | Sbjct 9299 CCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTTAAT 9358 Query 15013 ATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATT 15072 |||| | |||||||||| || ||||| | || |||||||||||||| | || Sbjct 9359 GTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAA 9418 Query 15073 CCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCT 15132 |||| ||||| |||| |||||| |||| || ||||| | ||| || ||| Sbjct 9419 CCTTTTTTGTCTTGAATTCGAGCTTTTACGTTTTCAATTGTATCAGCAAGTTCAACTTCT 9478 Query 15133 AAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 9479 AATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATA 9523 Score = 105 bits (116), Expect = 5e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 || ||| ||| | | |||||| || ||||| || |||||| |||| | | |||||| | Sbjct 9091 ATCAAGAGTATATTTTTTTTGAATATTGTAGTCACTGAGAGTTCTTTCATTTTCTAACTC 9150 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | | ||||| ||||| || ||||| ||||| ||||| |||||| Sbjct 9151 CTTACCAGCAAAAAACAAACTTTGTTGATCTAGTGGAACACCTTCTTTGTCGTGAATTTT 9210 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| || | || || ||||| | ||| || ||||| || ||||||||||| || Sbjct 9211 AGCTTTCACGTTGTCAATTGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGT 9270 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| ||||| || | |||| || Sbjct 9271 AAGGGTTTTCACAAATATATTCATACTT 9298 Score = 95.1 bits (104), Expect = 9e-15 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| | ||| | ||||| ||| | |||||| | |||| | || || Sbjct 9524 CCTCCTCTTAATCGAAGAACAAGTTGAAGAACAGATTTTTTTTGAACGTTGCAGTCACTT 9583 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | || || ||||||||| | | ||| | || ||||||||||| || |||| Sbjct 9584 AATGTT---GCATCTTCTAATAGAATACCATGAAAAATTAAACGCTGTTGATCTGGTGGA 9640 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 | ||||| ||||| |||||||| |||||| || || |||| | ||| || Sbjct 9641 ACACCTTCTTTGTCGCAAATTTTAGCTTTTACTTCGTCAATTGTATTAGCAGGTTCAACC 9700 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || | ||||||||| || || ||||| ||||| ||||||||| Sbjct 9701 TCTAACGTGAAGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATA 9748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357300895865060