Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq266 116 3e-21 seq24 105 6e-18 seq2327 100 3e-16 >seq266 Length=263831 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| || ||||| || ||||||||||| | |||| | ||| || Sbjct 46714 ACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCT 46773 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || ||||| || || | ||||| ||||| || || || ||||| |||||||| ||||| Sbjct 46774 AACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 46833 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | || | || || | || || || || | |||| |||||| Sbjct 46834 ATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTG 46893 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| |||||| ||||| |||||||| Sbjct 46894 CCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| || ||||| || ||||||||||| | |||| | ||| || Sbjct 46942 ACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCT 47001 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || ||||| || || | ||||| ||||| || || || ||||| |||||||| ||||| Sbjct 47002 AACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 47061 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | || | || || | || || || || | |||| |||||| Sbjct 47062 ATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTG 47121 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| |||||| ||||| |||||||| Sbjct 47122 CCAGTTAAAGTTTTAACAAATATTTGCAT 47150 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| || ||||| || ||||||||||| | |||| | ||| || Sbjct 46486 ACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCT 46545 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || ||||| || || | ||||| ||||| || || || || || |||||||| ||||| Sbjct 46546 AACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 46605 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | || | || || | || ||||| || | || | |||||| Sbjct 46606 ATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTG 46665 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| |||||| || || |||||||| Sbjct 46666 CCAGTTAAAGTTTTAACGAATATTTGCAT 46694 >seq24 Length=448628 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||| ||||| ||||| || || || | ||| || ||| || Sbjct 62595 ACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTACCATCTTCT 62536 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || | || || || || || || || ||||| |||||||| |||||| Sbjct 62535 AATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 62476 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||| | || | || | || || | || || || || | ||| | ||||| Sbjct 62475 ATTTTAGCTTTTA-CGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTT 62417 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| |||||||| Sbjct 62416 ACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||| ||||| || || || || |||| ||| | ||| || Sbjct 62823 ACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCCTCT 62764 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || | || || || |||||||| || ||||| ||||| || |||||| Sbjct 62763 AATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGA 62704 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||| | || | || | || || | || || || || | ||| | ||||| Sbjct 62703 ATTTTAGCTTTTA-CGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTT 62645 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| |||||||| Sbjct 62644 ACCAGTAAGGGTTTTTACAAATATTTGCAT 62615 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||| ||||| || || ||||| || | ||| || ||| || Sbjct 62139 ACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTACCATCTTCT 62080 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || | || || || || ||||| || ||||| ||||| || |||||| Sbjct 62079 AATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGA 62020 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||| | || | || | || || | || || || || | || | ||||| Sbjct 62019 ATTTTAGCTTTTA-CGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTT 61961 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| ||||| |||||||| Sbjct 61960 ACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||| ||||| ||||| || || || | ||| || ||| || Sbjct 62367 ACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTACCATCTTCT 62308 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || | || || || || || || || ||||| |||||||| |||||| Sbjct 62307 AATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 62248 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||| | || | || | || || | || || || || | || | ||||| Sbjct 62247 ATTTTAGCTTTTA-CGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTT 62189 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| ||||| |||||||| Sbjct 62188 ACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 >seq2327 Length=102395 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || | ||| || || || ||||| || || || |||||||| || |||||||| || Sbjct 34858 CCACCTCTGAGTCTTAAAACGAGATGAAGTGTAGACTCCTTTTGAATGTTATAATCACTT 34917 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || || || ||||| || | || | |||||||||||| || ||| Sbjct 34918 AATGTCCTTCCATCTTCTAACTGCTTTCCAGCAAAGATAAGTCGTTGCTGGTCTGGTGGA 34977 Query 45234 ATGCCTTCTTTATCTTGAATTTT 45256 || |||||||||||||||||||| Sbjct 34978 ATACCTTCTTTATCTTGAATTTT 35000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451885023763360