Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq12660 104 6e-17 seq24 102 2e-16 seq2327 96.9 8e-15 >seq12660 Length=10627 Score = 104 bits (114), Expect = 6e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || ||||| || || ||||| || ||||||| | || || || ||||| Sbjct 9764 AGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTTAATGTTCTATCATCT 9823 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | | ||| || || || || | |||||| ||||| || |||| |||||| || Sbjct 9824 TCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAACCTTCTTTGTCT 9883 Query 199538 TGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| |||| ||| ||| | || || | | ||| || || || ||||| || Sbjct 9884 TGAAT-TTTAGCTTTTACGTTTTCAATTGTATCAGCAGGTTCAACTTCTAATGTGATGGT 9942 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTT 199625 ||||| || || ||||||||||| |||| Sbjct 9943 TTTACCAGTAAGGGTTTTCACAAATATTT 9971 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || ||||| || || ||||| || ||||||| | || || || ||||| Sbjct 9311 AGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTTAATGTTCTATCATCT 9370 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | | ||| || || || || | |||||| ||||| || |||| |||| | || Sbjct 9371 TCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAACCTTTTTTGTCT 9430 Query 199538 TGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| | |||| ||| ||| | || || | ||| || || || ||||| || Sbjct 9431 TGAAT-TCGAGCTTTTACGTTTTCAATTGTATCAGCAAGTTCAACTTCTAATGTGATGGT 9489 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||||||||| ||||| Sbjct 9490 TTTACCAGTAAGGGTTTTCACAAATATTTG 9519 >seq24 Length=448628 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || || || || ||||| | |||||| ||| || || || |||||| Sbjct 62142 AGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTACCATCT 62083 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | ||||| || || || || | |||||| ||||| || ||| ||||| || Sbjct 62082 TCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCT 62023 Query 199538 TGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| |||| ||| || | || || | | ||| || || |||||||| || Sbjct 62022 TGAAT-TTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGT 61964 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||||||||| ||||| Sbjct 61963 TTTACCAGTAAGGGTTTTCACAAATATTTG 61934 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || || || || ||||| | ||||||||| || || || |||||| Sbjct 62370 AGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTACCATCT 62311 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | ||||| || || || || | |||||| || || || ||| |||||| || Sbjct 62310 TCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCT 62251 Query 199538 TGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| |||| ||| || | || || | | ||| || || |||||||| || Sbjct 62250 TGAAT-TTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGT 62192 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||||||||| ||||| Sbjct 62191 TTTACCAGTAAGGGTTTTCACAAATATTTG 62162 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || || || || || ||||| | |||||||||| | ||| || ||||| Sbjct 62826 AGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCC 62767 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | ||||| || || || || | |||||||||||| || ||| ||||| || Sbjct 62766 TCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCT 62707 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || || ||| || | || || | | ||| || || || ||||| || Sbjct 62706 TGAAT-TTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGT 62648 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| ||||| ||||| Sbjct 62647 TTTACCAGTAAGGGTTTTTACAAATATTTG 62618 >seq2327 Length=102395 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| | || || || || || ||||||||||| | ||| || ||| || |||||| Sbjct 34867 AGTCTTAAAACGAGATGAAGTGTAGACTCCTTTTGAATGTTATAATCACTTAATGTCCTT 34926 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| | ||||||||| || ||||| || || |||||||| || ||| |||||| Sbjct 34927 CCATCTTCTAACTGCTTTCCAGCAAAGATAAGTCGTTGCTGGTCTGGTGGAATACCTTCT 34986 Query 199532 CGCTCCTGAATCTTTTGCTT 199551 || ||||| ||| |||| Sbjct 34987 TTATCTTGAAT-TTTAGCTT 35005 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||||||||| || ||||||||||| |||||||||||||| || ||||| ||| | || Sbjct 34959 ACTTATCTTTGCTGGAAAGCAGTTAGAAGATGGAAGGACATTAAGTGATTATAACATTCA 34900 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 201026 || |||||||| ||||| || ||||| ||||| Sbjct 34899 AAAGGAGTCTACACTTCATCTCGTTTTAAGACT 34867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178605665221372