Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq266 87.8 1e-12 seq24 84.2 2e-11 >seq266 Length=263831 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGCC 39584 |||||||| || ||||||||| || | |||| ||| || || ||||| || | Sbjct 46504 TCTTTTTGAATGTTATAATCGCTCA----GGGTTCTGCCATCTTCTAACTGTTTACCAGC 46559 Query 39585 AAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA- 39643 |||||| ||||| || ||||| | || | ||||||||||| ||||| ||| | Sbjct 46560 AAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTCAC 46619 Query 39644 -TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTT 39702 | ||| || || || || ||| || ||||| || || ||||| || ||||||||| Sbjct 46620 ATTGTCAATA--GTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTT 46677 Query 39703 TTTACGAAGATCTGCAT 39719 || ||||| || ||||| Sbjct 46678 TTAACGAATATTTGCAT 46694 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGCC 39584 |||||||| || ||||||||| || | |||| ||| || || ||||| || | Sbjct 46732 TCTTTTTGAATGTTATAATCGCTCA----GGGTTCTGCCATCTTCTAACTGTTTACCAGC 46787 Query 39585 AAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA- 39643 |||||| ||||| || ||||| | || | ||||||||||| ||||| ||| | Sbjct 46788 AAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTCAC 46847 Query 39644 -TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTT 39702 | ||| || || || || ||| || ||||| ||||| ||||| || ||||||||| Sbjct 46848 ATTGTCAATA--GTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTT 46905 Query 39703 TTTACGAAGATCTGCAT 39719 || || || || ||||| Sbjct 46906 TTAACAAATATTTGCAT 46922 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGCC 39584 |||||||| || ||||||||| || | |||| ||| || || ||||| || | Sbjct 46960 TCTTTTTGAATGTTATAATCGCTCA----GGGTTCTGCCATCTTCTAACTGTTTACCAGC 47015 Query 39585 AAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA- 39643 |||||| ||||| || ||||| | || | ||||||||||| ||||| ||| | Sbjct 47016 AAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTCAC 47075 Query 39644 -TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTT 39702 | ||| || || || || ||| || ||||| ||||| ||||| || ||||||||| Sbjct 47076 ATTGTCAATA--GTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTT 47133 Query 39703 TTTACGAAGATCTGCAT 39719 || || || || ||||| Sbjct 47134 TTAACAAATATTTGCAT 47150 >seq24 Length=448628 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || || || || | ||| | ||| ||||||||| ||||| || || Sbjct 62613 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62554 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | |||| || ||||| || || |||||||||||||||| ||||| | || Sbjct 62553 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62494 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| ||||| ||| | ||| | | | || || || ||| || Sbjct 62493 ATACCTTCTTTGTCTTGAATTTTAGCTTTTA-CGTTGTCAATCGTATCAGCAGGTTCAAC 62435 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || |||||||| || | |||||||| || || ||||| Sbjct 62434 CTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347281050712628