Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq819 437 1e-117 seq2293 152 7e-32 seq7823 98.7 1e-15 seq1180 98.7 1e-15 seq1425 87.8 2e-12 >seq819 Length=174802 Score = 437 bits (484), Expect = 1e-117 Identities = 946/1393 (68%), Gaps = 53/1393 (4%) Strand=Plus/Minus Query 6497 TCGACCGTTCCTTTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTT 6556 || || ||| |||||| | |||||||||| |||| | | ||||| || | || |||| Sbjct 45596 TCAACAGTTTGTTTCATATTATAACAGTAGCTTTCCAAAGAGTTCTTTGCTT-GAACTTT 45538 Query 6557 TTCGCG-TACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615 || || | ||| || || |||| |||||||| || ||||| |||||| ||||||| Sbjct 45537 ATCTCGCTGAAGTTCGTCATCGGCTTTGTACTTTTCAGCTTCTTGCACCATCCTTTCAAT 45478 Query 6616 GTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGA 6675 |||||||| || | | || |||||||| || || ||||| || | ||| || | Sbjct 45477 ATCTTCTTTAGAAAGACGACCTTTATCATTAGTTATGGTAATTTTATTTTCTTTTCCAGT 45418 Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735 || ||| ||| ||||| | ||| ||||||||||||||||| || |||| | Sbjct 45417 ACTTTTGTCTAGTGCAGAAACATTTAGAATTCCATTTGCATCAACATCAAAAGTTACCTC 45358 Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAA 6795 ||||| || ||| || || || | ||||||||||| | ||||| | || || | Sbjct 45357 GATTTGAGGAACACCTCTTGGAGCAGGTGGAATACCCGAGAGTTCAAACTTGCCCAGGAG 45298 Query 6796 ACTGTTATCCGTCGCCT-TCTTACGT---TCACCTTCATAGACTTTAATTGTCACCGCAG 6851 ||||| || | || || ||| | || || ||| | |||| ||| || ||| Sbjct 45297 ---GTTATT-GTGGGCTGTCATACTTCTTTCTCCCTCAAAAACTTGGATTAAAACTCCAG 45242 Query 6852 GTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTC 6911 ||||||| ||| ||| | ||| | || | |||| ||||| || || |||| Sbjct 45241 GTTGATTGTCTGAATACGTCGTGAACACCTGGGAATATTTAGTTGGAACAGTAGTGTTTC 45182 Query 6912 TCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCA 6971 | ||| | || || | | ||||| || || | |||||| || | ||||| | Sbjct 45181 TTTTAATTAATGGAGTAAATACTCCACCAGCTGTCTCAATTCCAAGTGATAAAGGTGCGA 45122 Query 6972 CGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTT 7031 | || | ||||| || |||||||| | ||| | ||||| | || || || |||| Sbjct 45121 CATCAAGAAGTAATAGATCTTGAACTGCTTCATGTTTATCACCAGCCAAAATAGCTGCTT 45062 Query 7032 GGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTAC 7091 | || | || || || || || || ||||| || ||||| | ||| || || || |||| Sbjct 45061 GAACAGCGGCACCATAAGCAACAGCTTCATCCGGATTAATTGATTTGTTGAGCTCCTTAC 45002 Query 7092 CGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCA 7151 | |||||| | ||| | | ||| | ||| || || || || || ||||| |||| Sbjct 45001 CATTAAAAAATTCCTGAAGTAGACTTTGCACTTTTGGAATACGAGTTGAGCCACCAACCA 44942 Query 7152 AAACGATTTCAT-----TCA--CTTTCG---ATTT--------ATCGATCTTTG-AG--T 7190 |||| | ||| | ||| |||| |||| | | | ||| || | Sbjct 44941 AAACAACTTCGTGGATGTCAGACTTTGAGAAATTTTGACCGCTACTGTTTTTTCCAGCAT 44882 Query 7191 CTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGAACAAGTCCATACACAGTT 7247 ||| || | | | ||||| | | ||| | || ||||| || || || | | Sbjct 44881 CTCTAATAGCATCCGCAACAGGACCTAGGGTACCTCTA---AACAAATCAATGCATAACT 44825 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 | ||||||||||| || || || || || || ||||||| || || | || ||||||| Sbjct 44824 CTTCAAAACGTGCGCGTGTGATTGACGTGTAAAAATCAATTCCATCAAACAAAGAATCAA 44765 Query 7308 TTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTC 7367 |||||| ||| ||| | | | || | |||| ||| || | ||| || || |||| Sbjct 44764 TTTCAACACTTGCTTGAGTACTGGCTGAAAGTGTTCTCTTAGCCCTCTCGCATGCTGTTC 44705 Query 7368 GTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACT 7427 |||| || || || || | ||| ||||||||||| |||||||| | |||||| | Sbjct 44704 GTAAGCGTCGCAGAGCTCTTTTGTTGGAAGAAATATCTTTTTTATGTTTTCTTTTAAATT 44645 Query 7428 CTTCAGAGAAGTG-TCGA-AGGAGTCTCGA--ATCGAAATCTTCACCACCCAAGTGTGTA 7483 | ||| || || | || | || ||| |||||||||||||||||| | ||||| Sbjct 44644 CATCAACAAAATGGTTGACAAGA----CGATTATCGAAATCTTCACCACCAAGATGTGTG 44589 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || || | ||| |||||||| ||||| |||| || | | ||||||||| Sbjct 44588 TCACCTGCAGTTGATTTTACTTCAAATATACCATCTTCTATCGCAAGAATAGAAACATCA 44529 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGT--CTTTGTTCTTAT 7601 || || |||||||||| ||||| || || || || | || ||| | || |||| Sbjct 44528 AAAGTTCCACCACCCAAATCAAAGATAAGCACATTTTTCTC--CGTTCCAACTTTTTTAT 44471 Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGG 7660 ||||||| || || || || || || || |||||||| ||||| || || ||| |||| Sbjct 44470 CGAGACCATAAGCAATCGCAGCTGCAGTCGGTTCATTGATAATTCGCAAAACA-TTCAAC 44412 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 ||||||||| | |||||||||| || ||||| ||||| ||||| |||||||| || || Sbjct 44411 CCAGCAATAACTCCCGCATCTTTAGTTGCTTGACGTTGAGAATCATTAAAGTAAGCAGGT 44352 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 || |||| ||| | || |||||||| ||||| ||||||| ||||| || || ||||| Sbjct 44351 ACAGTTATGACAACATCTGTGACTTTTTTACCAAGATACGCATCCGCTATTTCCTTCATC 44292 Query 7781 TTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG-TTTCGTTTCACCGTTAAA 7839 || || ||||| || || ||||| || | | | | || ||||||||| || ||||| Sbjct 44291 TTTAGCAGCACCATGGAGGATATCTCCTCTG-GGTAGAATGATTTCGTTTCTCCTTTAAA 44233 Query 7840 ATCAACTTCAATC 7852 ||||||| |||| Sbjct 44232 CTCAACTTGAATC 44220 Score = 86.0 bits (94), Expect = 8e-12 Identities = 151/220 (69%), Gaps = 9/220 (4%) Strand=Plus/Minus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||| ||||||||| |||||||| || ||| || || || || || || || | | Sbjct 43860 CAAACACTGTGTTTGAAGGGTTCATAGCAACTTGATTTTTTGCTGCATCTCCAATTAATC 43801 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 ||| | | | ||||| || ||||| ||| || || ||||||||||| ||||| | Sbjct 43800 TTTCTGTGT---CGGTAAATGCAACGTAACTTGGAGTGGTGCGATTCCCTTGCTCGTTAG 43744 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 |||| ||||| || ||| ||| | || || || || || || ||||| || | || Sbjct 43743 CAATTATTTCAACTTTTCCGTGTTGGAAAACTCCAACACAAGAGTAAGTTGTGCCAAGAT 43684 Query 8136 CAATACCGAT------TGCTTGAGTCATTTTATATATTTT 8169 |||| || || |||| || |||||| | |||||| Sbjct 43683 CAATTCCAATAGCTGGCGCTTTAGACATTTTTTGTATTTT 43644 >seq2293 Length=103216 Score = 152 bits (168), Expect = 7e-32 Identities = 227/319 (71%), Gaps = 5/319 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||||||||| || | || ||||| || || | |||||||| | ||| Sbjct 13433 ATCAAAATCTTCACCTCCAAGATGGGTATCACCATTTGTTGAAACAACTTCAAATACACC 13374 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||||| |||| | ||||||||||| ||||||||||||| |||||| | ||||| Sbjct 13373 GTTATCAATGGTTAATAGAGAAACATCAAAAGTACCACCACCCAAGTCAAATACAAGTAC 13314 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || | ||||| || ||| | |||||| || || || || || ||||| || Sbjct 13313 ATTTTTTTCTCCCTCTTTTTT---ATCTAAACCGTAAGCAATTGCTGCAGCGGTTGGCTC 13257 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 ||||||||| || | ||| || | |||||||| | |||||||| || ||||| | Sbjct 13256 ATTAATAATTCGCATCACA-TTTAAACCAGCAATTACACCAGCATCTTTTGTTGCTTGAC 13198 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 |||| | ||| |||||||| || || || || || || || | || ||||| || || | Sbjct 13197 GTTGAGCATCATTAAAGTAAGCAGGAACAGTGACAACAGCATGAGTTACTTTTTTGCCTA 13138 Query 7755 GATACGATTCCGCGATATC 7773 | || | ||| || || || Sbjct 13137 GGTATGCTTCAGCTATTTC 13119 Score = 150 bits (166), Expect = 2e-31 Identities = 273/396 (69%), Gaps = 4/396 (1%) Strand=Plus/Minus Query 6566 TTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTC 6625 |||| |||||||||| | | ||||| ||||| | ||||| ||||| ||||| Sbjct 14595 TTTTTATCTTCATCTGCAAATTTTTCAGCATCATTAACCATACGCTCAATATCTTCAGGA 14536 Query 6626 GATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCT 6685 || ||||| || |||||| ||||| ||||||||||| || || | | |||||| Sbjct 14535 GACAATCTATTCTGATCATTGGTAATTGTAATCTTTTCTTTCTTTCCAGTACCTTTATCT 14476 Query 6686 TCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGT 6745 || ||||| || | | |||||| || |||||| || || | || | |||||| || Sbjct 14475 TCTGCACTAACTCTGAGAATACCGTTAACATCAATTTCAAAAGTAACTTCAATTTGAGGA 14416 Query 6746 GTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACC-AAGTAAACTG-TTAT 6803 ||| | || || | |||||||| | ||||||||| | || || | | || || | Sbjct 14415 ACACCACGAGGAGCAGGAGGAATACCATTCAAATCAAATTTTCCTAACTGA--TGATTGT 14358 Query 6804 CCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTT 6863 | | | | | ||||||||||||| | |||| |||||| || | |||| |||||| Sbjct 14357 CTTTTGTCATTGGACGTTCACCTTCAAAAACTTGAATTGTGACAGTTTGTTGGTTATCTG 14298 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 || ||||| ||||||||| ||| || | ||||| || || | ||| | Sbjct 14297 CAGCAGTTGAAAAGATTTGTGATTTTTTGGTTGGAACAACAGTGTTACGACTAATCAATT 14238 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAG 6959 |||||| | |||||| | |||||||| |||||||| Sbjct 14237 TGGTCATTACACCACCAACAGTTTCGATTCCAAGAG 14202 >seq7823 Length=30824 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 11458 GCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAATTCAAATATA 11517 |||||||||||||| ||||| |||||||| ||| ||||| ||||| | |||| | | Sbjct 6558 GCATCAATTTCATCAATAAAAATAATACAGGGTGCATTTTTGCGTGCTTGTGCAAACAAA 6499 Query 11518 TCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCGAACAC 11577 ||||| ||||| || || || || |||||||| |||| || ||| || | | || Sbjct 6498 TCACGAACTCTAGCTGGACCAACACCAACAAACATCTCAAGAAATTCTGATCCAG-ATAC 6440 Query 11578 TGA-ATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGT 11636 ||| | |||||| || || |||||| ||| |||| ||||| | ||||| || || Sbjct 6439 TGATAAAAAAGGTACTCCAGCTTCACCAGCTGTAGCTTTTGCTAGTAAAGTTTTTCCAGT 6380 Query 11637 ACCTGG 11642 ||||| Sbjct 6379 TCCTGG 6374 >seq1180 Length=149830 Score = 98.7 bits (108), Expect = 1e-15 Identities = 176/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 11533 GCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCGAACACTGAATAAAAGGAACG 11592 || || || || |||||||||||| | ||| ||||| || || ||||||||| Sbjct 123883 GCACCAACTCCAACAAACATTTCATCAAACTCAGACCCTGATGCAAAAAAAAAAGGAACA 123942 Query 11593 GAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTT 11652 | ||| || |||||||| |||||||| | |||||| || ||||| || ||| | Sbjct 123943 TCTGCTTCCCCTGCTATAGCCCGTGCTAATAATGTTTTTCCGGTACCAGGAGGACCAATC 124002 Query 11653 AATAATGCACCCCTTGGTATTTTAGCACC--GGTACCAAAGTACTTTTCTGGCGCCTTGA 11710 ||||| |||| | ||||| |||||||| | | || |||| ||||| ||| | Sbjct 124003 AATAAAACACCACCTGGTAACTTAGCACCAAGTTTTTGAA--ACTTCTCTGGGTTCTTTA 124060 Query 11711 GAAAATCAACAATTTCTTCGAGCTCATCTTTCGCGCTATCTATACCCTGAACATCATCAA 11770 ||| ||||||| |||||| | ||| || || || || ||| | |||||| |||| Sbjct 124061 AAAACTCAACAACTTCTTCCAACTCTTCCTTAGCTTCGTCGCAACCTTCAACATCTTCAA 124120 Query 11771 ACCGTACTGTTATTT 11785 | |||||| ||| Sbjct 124121 ATTTAACTGTTTTTT 124135 >seq1425 Length=136094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/194 (70%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||| |||||||| || || || ||||||||||| || || || || || ||||| | Sbjct 125782 CAAATACTGTGTTAGAAGGATTGATTGCTGTTTGGTTTTTGGCGGCATCACCAATAAGTC 125723 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 |||| | | | ||||| || || || || || || ||||| ||||| || || | Sbjct 125722 TTTCAGTGT---CAGTAAAGGCAACATAACTGGGTGTAGTACGATTACCTTGTTCATTGG 125666 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 ||||||||||||| | | ||| | || || || || || || || ||||| | || Sbjct 125665 CAATAATTTCTACTTTACCATGTTGGAAAACACCTACACAAGAGTAAGTAGTTCCGAGAT 125606 Query 8136 CAATACCGATTGCT 8149 | || || |||||| Sbjct 125605 CTATTCCAATTGCT 125592 Score = 86.0 bits (94), Expect = 8e-12 Identities = 135/193 (70%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||| |||||||| || || || ||||||||||| || || || || || ||||| | Sbjct 99789 CAAATACTGTGTTAGAAGGATTGATTGCTGTTTGGTTTTTGGCGGCATCACCAATAAGTC 99730 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 |||| ||| | ||||| || || || || || || ||||| ||||| || || | Sbjct 99729 TTTCAGTAT---CAGTAAAGGCAACATAACTGGGTGTAGTACGATTACCTTGATCATTGG 99673 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 ||||||||||||| | | ||| | || || || || || || || ||||| | || Sbjct 99672 CAATAATTTCTACTTTACCATGTTGGAAAACACCTACACATGAGTATGTAGTTCCAAGAT 99613 Query 8136 CAATACCGATTGC 8148 | || || || || Sbjct 99612 CTATTCCAATAGC 99600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634966744529440