Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq266 154 3e-32 seq2327 140 7e-28 seq24 140 7e-28 seq12660 109 1e-18 seq5503 89.7 1e-12 seq1713 89.7 1e-12 >seq266 Length=263831 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || |||||||||||||| || |||||| || ||||| |||||||| Sbjct 46713 AACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTC 46772 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| ||||| || || || | |||||||| ||||| ||||| |||||||||||||| Sbjct 46773 TAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 46832 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || || ||||| || || | | ||| || || | |||| || || Sbjct 46833 GATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTT 46892 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| || || | |||||| Sbjct 46893 GCCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || |||||||||||||| || |||||| || ||||| |||||||| Sbjct 46941 AACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTC 47000 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| ||||| || || || | |||||||| ||||| ||||| |||||||||||||| Sbjct 47001 TAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 47060 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || || ||||| || || | | ||| || || | |||| || || Sbjct 47061 GATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTT 47120 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| || || | |||||| Sbjct 47121 GCCAGTTAAAGTTTTAACAAATATTTGCAT 47150 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || |||||||||||||| || |||||| || ||||| |||||||| Sbjct 46485 AACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTC 46544 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| ||||| || || || | |||||||| ||||| || || |||||||||||||| Sbjct 46545 TAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTG 46604 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || || ||||| || || | | ||| || || | || | || || Sbjct 46605 GATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTT 46664 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| ||||| | |||||| Sbjct 46665 GCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || ||||| |||||||||||||| || ||||| || ||||| |||||||| Sbjct 46257 AACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTCAGTGTTCTGCCATCTTC 46316 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| ||||| || || || | |||||||| ||||| || || |||||||||||||| Sbjct 46317 TAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTG 46376 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || || ||||| || || | | ||| || || | || | || || Sbjct 46377 GATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTT 46436 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| || || | |||||| Sbjct 46437 GCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 93.3 bits (102), Expect = 9e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || |||||||||||||| || ||||| || ||||| |||||||| Sbjct 47169 AACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCACTCAGTGTTCTGCCATCTTC 47228 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||| ||||| || || || | || ||||||||||| || || ||| Sbjct 47229 TAACTGTTTACCAGCAAAAATCAAACGCTGTTGGTCTGGTGGGATACCT 47277 >seq2327 Length=102395 Score = 140 bits (154), Expect = 7e-28 Identities = 128/162 (79%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| ||||| || ||||| || ||||| |||||||| || ||||| | || Sbjct 34863 TCTGAGTCTTAAAACGAGATGAAGTGTAGACTCCTTTTGAATGTTATAATCACTTAATGT 34922 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || |||||||| | |||||| || || |||||||||||||| |||||||| ||||| || Sbjct 34923 CCTTCCATCTTCTAACTGCTTTCCAGCAAAGATAAGTCGTTGCTGGTCTGGTGGAATACC 34982 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 |||||| ||||||||||| || || ||||| || || || Sbjct 34983 TTCTTTATCTTGAATTTTAGCTTTAACATTCTCGATTGTATC 35024 >seq24 Length=448628 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| ||||| ||||| ||||||||||||||||| || | ||||| |||||||| Sbjct 62596 AACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTACCATCTTC 62537 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||||| || || || | || ||||| ||||| ||||| |||||||||||||| Sbjct 62536 TAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 62477 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || ||||| ||||| || || | | ||| || || | || | || || Sbjct 62476 AATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTT 62417 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||||| || | |||||| Sbjct 62416 ACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| ||||| ||||| ||||||||||| |||||||| | ||||| |||||||| Sbjct 62140 AACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTACCATCTTC 62081 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||||| || || || | || ||||||||||| ||||| ||||| |||||||| Sbjct 62080 TAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTG 62021 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || ||||| ||||| || || | | ||| || || | || | || || Sbjct 62020 AATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTT 61961 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | |||||| Sbjct 61960 ACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| ||||| ||||| ||||||||||||||||| || | ||||| |||||||| Sbjct 62368 AACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTACCATCTTC 62309 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||||| || || || | || ||||| ||||| ||||| |||||||||||||| Sbjct 62308 TAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 62249 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || ||||| ||||| || || | | ||| || || | || | || || Sbjct 62248 AATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTT 62189 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | |||||| Sbjct 62188 ACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || || ||||||||||| ||||| || |||||||||||||| || Sbjct 62823 ACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCCTCT 62764 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| || || || | || || |||||||| ||||| ||||| ||||||||| Sbjct 62763 AATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGA 62704 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || ||||| ||||| || || | | ||| || || | || | || || Sbjct 62703 ATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTA 62644 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||||| || | |||||| Sbjct 62643 CCAGTAAGGGTTTTTACAAATATTTGCAT 62615 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| ||||| ||||| ||||||||||| |||||||| | ||||| |||||||| Sbjct 61912 AACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTACCATCTTC 61853 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||| || || ||||| | |||||||| ||||| ||||| ||| Sbjct 61852 TAACTGCTTGCCAGCAAAGATTAAACGTTGTTGATCTGGCGGAATACCT 61804 >seq12660 Length=10627 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| |||||||| || |||||||||| |||||| | | ||||| ||||||| Sbjct 9766 AACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTTAATGTTCTATCATCTTC 9825 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | | |||||| || || || | || ||||||||||| || |||||||||||||| Sbjct 9826 TAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAACCTTCTTTGTCTTG 9885 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || ||||| ||||| || || | | ||| ||||| | || | || || Sbjct 9886 AATTTTAGCTTTTACGTTTTCAATTGTATCAGCAGGTTCAACTTCTAATGTGATGGTTTT 9945 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | || ||| Sbjct 9946 ACCAGTAAGGGTTTTCACAAATATTTTCAT 9975 Score = 100 bits (110), Expect = 6e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| |||||||| || |||||||||| |||||| | | ||||| ||||||| Sbjct 9313 AACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTTAATGTTCTATCATCTTC 9372 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | | |||||| || || || | || ||||||||||| || |||| ||||||||| Sbjct 9373 TAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAACCTTTTTTGTCTTG 9432 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||| || ||||| ||||| || || | | ||| ||||| | || | || || Sbjct 9433 AATTCGAGCTTTTACGTTTTCAATTGTATCAGCAAGTTCAACTTCTAATGTGATGGTTTT 9492 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | |||||| Sbjct 9493 ACCAGTAAGGGTTTTCACAAATATTTGCAT 9522 Score = 93.3 bits (102), Expect = 9e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 || ||| | |||||| | | ||||||||||||||| || |||||||| ||| ||| Sbjct 9085 AAAAAGATCAAGAGTATATTTTTTTTGAATATTGTAGTCACTGAGAGTTCTTTCATTTTC 9144 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || |||||| || || | | | |||||| ||| | |||| ||||||||||| || Sbjct 9145 TAACTCCTTACCAGCAAAAAACAAACTTTGTTGATCTAGTGGAACACCTTCTTTGTCGTG 9204 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || ||||| ||||| || || | | ||| || || | || | || || Sbjct 9205 AATTTTAGCTTTCACGTTGTCAATTGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTT 9264 Query 195111 TCCTGTCAAAGTTTTTACGAA 195131 || || | ||||| || || Sbjct 9265 ACCAGTAAGGGTTTTCACAAA 9285 >seq5503 Length=48954 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||||||||| ||||| | | ||||||||||||||| || || ||||| || || | Sbjct 3732 CTTTTTGAATATTATAATCAGACAAAGTTCTCCCATCTTCCAGTTGTTTACCAGCAAAAA 3673 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | | ||| ||||| ||||||||||| ||| Sbjct 3672 TTAATCGCTGTTGATCTGGAGGAATTCCT 3644 >seq1713 Length=122895 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||||||||| ||||| | | ||||||||||||||| || || ||||| || || | Sbjct 121731 CTTTTTGAATATTATAATCAGACAAAGTTCTCCCATCTTCCAGTTGTTTACCAGCAAAAA 121672 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | | ||| ||||| ||||||||||| ||| Sbjct 121671 TTAATCGCTGTTGATCTGGAGGAATTCCT 121643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109184274186572