Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4963 185 1e-41 seq2421 152 6e-32 >seq4963 Length=54722 Score = 185 bits (204), Expect = 1e-41 Identities = 253/351 (72%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 48444 ATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTA 48503 |||||||| ||| || || |||| ||| || ||| || ||||| ||| ||| Sbjct 22374 ATATAACTCCCAGAAGATCGTATACAGTGAATATGAAGACCAATGCCACCAGCCCATTTT 22433 Query 48504 GATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTAT-CAT 48562 || || | || || |||||| |||||| |||||||||| ||||||||| || | ||| Sbjct 22434 GAAATAATTGCGCATTGTTTAACAGTATCAAAAATTCCTTCAATACTATCA-CTCTGCAT 22492 Query 48563 ATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGG 48622 | ||||| |||||| || ||||| || || || || ||||| |||||||| || Sbjct 22493 AGCTAATAAAAAACAGCTTGACATCTGAGGTCTGGGGGTGCCAGAATTGAATAATGTAGG 22552 Query 48623 AGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT 48682 ||| |||||| |||||||||| ||||| | || ||||||||||| ||| ||| ||| | Sbjct 22553 AGAGGCATGAGTAAACCATTTTTCTGACATTAAATTATATGTTTCTATAGCAGCATCAAG 22612 Query 48683 ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 ||| ||||||||| | |||||| | ||| ||||| | |||||| || ||| || | Sbjct 22613 ATCTTCACCATGTATACCAACAGATACTCTCATCAACATGTGTTGAGGCCTCTCAGCAGT 22672 Query 48743 TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAA 48793 ||| ||| ||||| | | ||| ||| |||| | || | || | |||| Sbjct 22673 TTTACCATTAATTTTTAGCAAATAAGATCTTTCAAGAGTCTAAATATCAAA 22723 Score = 127 bits (140), Expect = 2e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 48264 TCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323 || || || ||| |||| |||| | || | |||||| || |||||||||||||| || Sbjct 22089 TCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAAGGC 22148 Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383 ||||| || || || ||| |||||||| || |||||||| ||||| | |||||| ||| Sbjct 22149 TCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTTGCA 22208 Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 ||||| ||| | ||||||||||| || | || ||||| || |||||| || Sbjct 22209 GTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGT 22261 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 47318 ATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGG 47377 |||||||| ||||||||||||||| || ||||| | ||| ||||| | || ||||| Sbjct 15781 ATTAACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAATAAATATTGTTAGTGTATGG 15840 Query 47378 TTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAAC 47437 ||| || |||||||| || |||| ||||||||| || || ||||| ||||| | ||||| Sbjct 15841 TTCAATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAGGCTGTTGGCATAGGAGCAAC 15900 Query 47438 TAATAAGCTATTTCTTACTCCAT 47460 |||||| || |||| || |||| Sbjct 15901 TAATAAACTGTTTCGAACACCAT 15923 Score = 105 bits (116), Expect = 8e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 47514 ACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTA 47573 |||||||| | |||||||||||| ||||||||||| || || || || | || | | | Sbjct 16106 ACATTCCACATATCATATTGAAGTATTCCTTTACTAATAGGTGACCCTTGGTAACTCTCA 16165 Query 47574 TAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTT 47633 |||| || | | || ||| | ||||||| |||||| ||||||| |||||| |||||| Sbjct 16166 TAAGTCCCATCTTTTTCAGCTAATTCACAAGATGCTTCTAATGCACCATAATAAATTGTT 16225 Query 47634 TCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGA 47681 ||||| || | | | || || || ||||| |||||||| ||| Sbjct 16226 TCAAAAATCTGTTTATTAAGTAGACTAGCTTCATCAGATTCAAATGGA 16273 Score = 100 bits (110), Expect = 3e-16 Identities = 120/158 (76%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATT-ATCTAACCCAGGAC 48162 ||| ||||| ||| |||| || ||||| |||||||| ||| | | |||| ||||||| Sbjct 21521 TTCATATTTCTGATACAACTCTTCGAATTCTTCCCCATA-ACAGTCAGCTAAACCAGGAC 21579 Query 48163 ATTCATTAGGACACATCAATGACCA-ATCCTCATCATTTTTTACTCTAGTCATAAATATA 48221 |||||| ||||||||| |||||||| || | | | | || |||||| ||||||||| Sbjct 21580 ATTCATGAGGACACATTAATGACCACATAC-CTTTCTCTTCTACTCTTCTCATAAATAGG 21638 Query 48222 TCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCT 48259 || || | ||||||| | | ||| ||||| | || ||| Sbjct 21639 TCGGGAACCCAAAGACCAAAAAACAAATCACGAGCTCT 21676 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 |||||||| |||| |||||||||||||| | ||||| |||| ||||| || || | || Sbjct 23684 CACTAAATTTTTTCTTTGTTTCTTTATGTAAGTTAGAAATAGCAATTCTTGCTGCAAGTA 23743 Query 48976 TAGCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTA 49035 ||||||||||||||| | || || || | || || |||||| || | | |||| Sbjct 23744 AAGCATAATCTGGATGTTTAGTAGTCATTGAAGCAGCTACTTCTGCGGCAAGAGTGTCTA 23803 Query 49036 ATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTC 49079 ||| ||| || | |||| || || || ||||||||||| Sbjct 23804 GCTCTACAGTGGTAATTCCTGGGTACATGCCACGAATAACTTTC 23847 >seq2421 Length=99546 Score = 152 bits (168), Expect = 6e-32 Identities = 212/296 (72%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 19036 CttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCT 19095 |||||||| | ||| ||||||| ||||| ||||| ||||| || || ||||| ||||| Sbjct 31727 CTTTTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCA 31668 Query 19096 GCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCC 19155 ||||| ||||| | | ||| || |||| || || | ||||||||| |||||| Sbjct 31667 GCAAATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCC 31608 Query 19156 CAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGC 19215 ||| | || || |||| ||||| ||||| || || || | |||||||| || | | Sbjct 31607 CAAACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAAT---TTGAC 31551 Query 19216 TCATCTGT---ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATA 19272 | ||| | |||||||| | ||| || | |||| ||||||||||| || || Sbjct 31550 TTTTCTATCGGATCTTTAATGAGAGTATCAATGAGTAAAGAATACATTTCTGAGTGGATG 31491 Query 19273 TTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| || ||||| ||||||||||| || || ||||| Sbjct 31490 TTTTCAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGTTGAACTTC 31435 Score = 131 bits (144), Expect = 2e-25 Identities = 170/230 (74%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 19351 TTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGT 19410 ||||||||||| |||||||| ||||| ||||| ||||| | ||||| ||||||| Sbjct 31317 TTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAACATGAGAGATAAAATAC 31258 Query 19411 TTTTCATCTGAGG-TTAATGTATTC----CAATCATTAATATCTTTAGATAAATCTACTT 19465 ||||| |||||| || | | ||| |||| | ||| || ||||| |||| Sbjct 31257 TTTTC--CTGAGGCTTCAGCTTTTCTTCCCAATGAACTGCATCAGCAGCCAAATCAACTT 31200 Query 19466 CTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATT 19525 |||||||||||||||| || || || |||| || ||||| ||||||||||| ||||| Sbjct 31199 CTTCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCATATATCTTTATATT 31140 Query 19526 GTATAGGAAATATAACAAATCTATTTTTATTTTCT-TTAAGAATAGGTTC 19574 | || ||||||| |||||| || ||||||| |||| ||| ||||| Sbjct 31139 GAATTGGAAATAAAACAAACCTTCGGGGATTTTCTCTTAATAAT-GGTTC 31091 Score = 116 bits (128), Expect = 4e-21 Identities = 172/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTAT 18845 || || |||||| || ||||| ||||||||| ||||| | | ||||||||||| Sbjct 32376 TATTAATCTATCAGCACAAAATTCAATATATGTTTTCATAAGACTTTTATTCATTCCTAA 32317 Query 18846 TAATTTAACAGG-TAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA 18904 || | ||||| || | || || | ||| || ||| ||| ||| || ||| | Sbjct 32316 -AAGATCACAGGGTAAAGACTCAGTCAAAAACTCAATTTCAATAGCTACAGCATCTCGAA 32258 Query 18905 TAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATG 18964 |||| | |||| |||||| ||| || || || ||||||| |||| | ||||| Sbjct 32257 TAATTTGTTTTACTCGTTCTTCAGAAGGCTTGTTTACAATATGTTTATACATAAGACATG 32198 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 |||| |||||||||| ||||| |||||||| ||||||||||| || || |||| |||| Sbjct 32197 CAAAGTCACAATGTAAACCCTCATCTCTACTGATCAATTCATTTGAGAAAGTTACTCCAG 32138 Query 19025 G 19025 | Sbjct 32137 G 32137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561961836654240