Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq4963 104 1e-17 >seq4963 Length=54722 Score = 104 bits (114), Expect = 1e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 26180 GATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAA 26239 |||| ||| |||| ||||| ||| || ||||||||||||||||||||| ||| || Sbjct 22389 GATCGTATACAGTGAATATGAAGACCAATGCCACCAGCCCATTTTGAAATAATTGCGCAT 22448 Query 26240 TCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAA 26299 | | ||| ||||| |||||||||| || ||||||| | ||| ||||||||||||| Sbjct 22449 TGTTTAACAGTATCAAAAATTCCTTCAATACTATCACTCTGCATAGCTAATAAAAAACAG 22508 Query 26300 GAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTA 26356 || | || | | || || ||||| |||||||| || | ||||||||| Sbjct 22509 CTTGACATCTGAGGTCTGGGGGTGCCAGAATTGAATAATGTAGGAGAGGCATGAGTA 22565 Score = 82.4 bits (90), Expect = 4e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 25985 TCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGT 26044 || ||||| || ||| ||||||| ||||| || || | |||||| | ||||| || Sbjct 22089 TCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAAGGC 22148 Query 26045 TCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCA 26104 ||||| ||||| |||| ||| || || || || ||||| || ||||||||| Sbjct 22149 TCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTTGCA 22208 Query 26105 GTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 || | ||| || ||| | ||||| |||| || |||| | ||| || ||||| Sbjct 22209 GTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGT 22261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252975496624700