Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq24 187 4e-42 seq266 159 6e-34 seq12660 156 8e-33 seq5503 95.1 2e-14 seq1713 95.1 2e-14 seq2327 86.0 1e-11 >seq24 Length=448628 Score = 187 bits (206), Expect = 4e-42 Identities = 183/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| |||||||| || ||||| | || | ||||| |||||| Sbjct 62622 ATTTGCATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTG 62563 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||| |||||| ||| |||||||| || || ||||||||||| | ||||||| Sbjct 62562 TAGTCACTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGA 62503 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| ||||| | ||||| || ||| ||||| | | Sbjct 62502 TCTGGTGGAATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCA 62443 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| |||| ||| || |||||||| || || |||||||||||||||||||| Sbjct 62442 GGTTCAACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 178 bits (196), Expect = 2e-39 Identities = 181/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| |||||||| || ||||| | || | ||||| |||||| Sbjct 62394 ATTTGCATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTG 62335 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||| |||||| ||| |||||||| || || ||||||||||| | ||||||| Sbjct 62334 TAGTCACTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGA 62275 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| ||||| | ||||| || ||| ||||| | | Sbjct 62274 TCTGGTGGAATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCA 62215 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| |||| || || |||||||| || || ||||| |||||||||||||| Sbjct 62214 GGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||||||||||||| || ||||| | |||| ||||| ||| || ||||| Sbjct 62841 CCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTG 62782 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| ||| |||||||| || || ||||||||||| | ||| || || || || Sbjct 62781 AGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 62722 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| || ||||| ||||| | ||||| || ||| ||||| | || ||||| Sbjct 62721 ATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 62662 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||| ||| || |||||||| || || |||||||||||||||||||| Sbjct 62661 TCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62615 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| |||||||| || ||||| | || | ||||| ||| || Sbjct 62166 ATTTGCATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTG 62107 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || ||| |||||| ||| |||||||| || || ||||||||||| | |||||| Sbjct 62106 TAATCACTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGG 62047 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| ||||| | ||||| || ||| ||||| | | Sbjct 62046 TCTGGTGGAATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCA 61987 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| |||| || || |||||||| || || ||||| |||||||||||||| Sbjct 61986 GGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 93.3 bits (102), Expect = 8e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || ||||||||||| || || | ||| | ||| ||||||||||| || || ||| Sbjct 61487 ATACCCTCTTTATCTTGAATCTTTGCTTTAACATTCTCAATAGTATCGGCAGCTTCTACT 61428 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 |||| ||| |||||||| || |||| ||||| ||||| |||||||| ||| Sbjct 61427 TCTAAAGTAATAGTTTTGCCAGTTAAAGTTTTCACAAAGATTTGCATCTTA 61377 >seq266 Length=263831 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||||||| || || || | || | |||||| ||| ||| Sbjct 46687 ATTTGCATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTA 46746 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||| | ||||| ||| ||||| ||||| || |||||||| || | |||||| Sbjct 46747 TAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGA 46806 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| ||||| | ||| | ||| ||||||||| | | Sbjct 46807 TCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCA 46866 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || | || || ||||| || |||| ||||| |||||||||||||| Sbjct 46867 GGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||||||| || || || | || | |||||| ||| ||| Sbjct 46915 ATTTGCATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTA 46974 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||| | ||||| ||| ||||| ||||| || |||||||| || | |||||| Sbjct 46975 TAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGA 47034 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| ||||| | ||| | ||| ||||||||| | | Sbjct 47035 TCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCA 47094 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || | || || ||||| || |||| ||||| |||||||||||||| Sbjct 47095 GGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 47150 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||||||| || || || | || | |||||| ||| ||| Sbjct 46459 ATTTGCATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTA 46518 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||| | ||||| ||| ||||| ||||| || |||||||| || | |||||| Sbjct 46519 TAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGA 46578 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| ||||| | ||| | ||| ||||||||| | | Sbjct 46579 TCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCA 46638 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || | || || ||||| || |||| ||||| || ||||||||||| Sbjct 46639 GGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Score = 147 bits (162), Expect = 4e-30 Identities = 175/236 (74%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||| || ||||| |||||||| || ||||| | |||| |||||| ||| ||| Sbjct 46232 ATTTTTATCCC-CCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTA 46290 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | ||||| ||| ||||| ||||| || |||||||| || | |||||| Sbjct 46291 TAATCACTCAGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGA 46350 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| ||||| | ||| | ||| ||||||||| | | Sbjct 46351 TCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCA 46410 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || | || || ||||| || |||| ||||| |||||||||||||| Sbjct 46411 GGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||||||||| ||||| | ||| | |||| ||||||||| | || |||||||| Sbjct 48563 CCTTCTTTATCTTGAATTTTTGCTTTCACATTTTCAATAGTATCAGCAGCTTCAACTTCC 48622 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTA 193367 | || || ||||| |||||||| ||||| ||||| || |||||||| ||| Sbjct 48623 AAGGTGATGGTTTTCCCTGTTAGAGTTTTAACAAAAATCTGCATTTTTTTA 48673 >seq12660 Length=10627 Score = 156 bits (172), Expect = 8e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| |||||||| || ||||| | |||| ||||| || ||| Sbjct 9740 ATTTGCATACCTCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTG 9799 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||| ||| |||||| ||| ||||||| || || ||||||||||| | |||||| Sbjct 9800 TAGTAACTTAATGTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGG 9859 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || | |||||||| ||||| ||||| | ||||| ||| ||| ||||| | | Sbjct 9860 TCTGGTAAAAAACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGCA 9919 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||||| || || |||||||| || || ||||| |||||||||| ||| Sbjct 9920 GGTTCAACTTCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTTCAT 9975 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||| ||||| |||||||| || ||||| | |||| ||||| || ||| |||| Sbjct 9293 ATACTTCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAA 9352 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||| |||||| ||| ||||||| || || ||||||||||| | |||||| || || Sbjct 9353 CTTAATGTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGT 9412 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 | |||| ||| ||||| ||| | ||||| ||| ||| ||||| | | ||| Sbjct 9413 AAAAAACCTTTTTTGTCTTGAATTCGAGCTTTTACGTTTTCAATTGTATCAGCAAGTTCA 9472 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| || || |||||||| || || ||||| |||||||||||||| Sbjct 9473 ACTTCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 9522 Score = 91.5 bits (100), Expect = 3e-13 Identities = 162/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| |||||||| || || || | || | ||| || || Sbjct 9515 ATTTGCATACCTCCTCTTAATCGAAGAACAAGTTGAAGAACAGATTTTTTTTGAACGTTG 9574 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||| ||| ||| | ||| |||||| | | || ||||||||| | ||||||| Sbjct 9575 CAGTCACTTAATGTT---GCATCTTCTAATAGAATACCATGAAAAATTAAACGCTGTTGA 9631 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || | |||||||| || ||||| | ||||| | ||| |||| | | Sbjct 9632 TCTGGTGGAACACCTTCTTTGTCGCAAATTTTAGCTTTTACTTCGTCAATTGTATTAGCA 9691 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| |||| || | |||||||| || || ||||| |||||||||||||| Sbjct 9692 GGTTCAACCTCTAACGTGAAGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 9747 >seq5503 Length=48954 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||||||||| ||||| | ||||| |||| |||||||| | || ||| || || Sbjct 3049 CCTTCTTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGCAGCCTCTACCTCA 2990 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| || ||||||| ||||| |||||||| ||||| || Sbjct 2989 AGGGTAATAGTCTTCCCTGTTAAGGTTTTAACAAATATCTGCATGTT 2943 >seq1713 Length=122895 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||||||||| ||||| | ||||| |||| |||||||| | || ||| || || Sbjct 120939 CCTTCTTTATCTTGAATTTTAGCTTTTACATTTTCTATAGTATCAGCAGCCTCTACCTCA 120880 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| || ||||||| ||||| |||||||| ||||| || Sbjct 120879 AGGGTAATAGTCTTCCCTGTTAAGGTTTTAACAAATATCTGCATGTT 120833 >seq2327 Length=102395 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| | || | || ||||| | ||||| ||| || ||| ||||| || Sbjct 34857 ACCACCTCTGAGTCTTAAAACGAGATGAAGTGTAGACTCCTTTTGAATGTTATAATCACT 34916 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || || ||| ||||| || ||||| ||||| || | || || || || || || Sbjct 34917 TAATGTCCTTCCATCTTCTAACTGCTTTCCAGCAAAGATAAGTCGTTGCTGGTCTGGTGG 34976 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||||||||| ||||| | ||| | ||| || ||||| | | ||| || Sbjct 34977 AATACCTTCTTTATCTTGAATTTTAGCTTTAACATTCTCGATTGTATCTGCTGGCTCGAC 35036 Query 193313 TTCTAGAGTTAT 193324 | | |||||| Sbjct 35037 CTTAAAAGTTAT 35048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899419185357120