Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq266 149 1e-30 seq24 145 2e-29 seq12660 122 2e-22 seq2327 109 1e-18 seq5503 95.1 2e-14 seq1713 95.1 2e-14 >seq266 Length=263831 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | || | |||| ||| | ||||| |||||| || ||||||||| Sbjct 46240 CCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTC 46299 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || || |||||||||||||| || || | |||||||| ||||| Sbjct 46300 AGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 46359 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| ||||| |||||| ||| ||||| |||| ||| | | ||| || Sbjct 46360 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACC 46419 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || |||||||| |||||||| ||||||| |||||| ||||| Sbjct 46420 TCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || | || | || | |||||| || |||||||| Sbjct 46693 ATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCG 46752 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | |||| |||| || || |||||||||||||| || || | |||||||| ||| Sbjct 46753 CTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 46812 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| ||||| |||| ||| | | ||| Sbjct 46813 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCA 46872 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||||||||| |||||||| ||||||| |||||| ||||| Sbjct 46873 ACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || | || | || | |||||| || |||||||| Sbjct 46921 ATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCG 46980 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | |||| |||| || || |||||||||||||| || || | |||||||| ||| Sbjct 46981 CTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 47040 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| ||||| |||| ||| | | ||| Sbjct 47041 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCA 47100 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||||||||| |||||||| ||||||| |||||| ||||| Sbjct 47101 ACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 47150 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || | || | || | |||||| || |||||||| Sbjct 46465 ATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCG 46524 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | |||| |||| || || |||||||||||||| || || | |||||||| ||| Sbjct 46525 CTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 46584 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| ||||| |||| ||| | | ||| Sbjct 46585 GGGATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCG 46644 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || |||||||| |||||||| ||||||| ||||| ||||| Sbjct 46645 ACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||||||||| ||||| ||| ||||| |||| ||| | | ||| ||||| Sbjct 48563 CCTTCTTTATCTTGAATTTTTGCTTTCACATTTTCAATAGTATCAGCAGCTTCAACTTCC 48622 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAAAAA 192549 | || |||||||| || |||| ||||||| ||| ||||||||||| ||| || || Sbjct 48623 AAGGTGATGGTTTTCCCTGTTAGAGTTTTAACAAAAATCTGCATTTTTTTATAATAA 48679 >seq24 Length=448628 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | || | || | ||| | || | ||||| ||||| || ||| Sbjct 62616 ATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCA 62557 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| |||| || ||||| ||||||||||| ||||| | ||||||||| ||| Sbjct 62556 CTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGT 62497 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| |||||| || || | ||| | | ||| Sbjct 62496 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 62437 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||| |||||||||||||| | ||||| | |||||| ||||| Sbjct 62436 ACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | || | || | ||| | || | ||||| ||||| || ||| Sbjct 62388 ATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCA 62329 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| |||| || ||||| ||||||||||| ||||| | ||||||||| ||| Sbjct 62328 CTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGT 62269 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| |||||| || || | ||| | | ||| Sbjct 62268 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 62209 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || |||||||||||||| | ||||| | |||||| ||||| Sbjct 62208 ACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | || | || | ||| | || | ||||| || || |||||| Sbjct 62160 ATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCA 62101 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| |||| || ||||| ||||||||||| ||||| | |||||| || ||| Sbjct 62100 CTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGT 62041 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| |||||| || || | ||| | | ||| Sbjct 62040 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 61981 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || |||||||||||||| | ||||| | |||||| ||||| Sbjct 61980 ACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 116 bits (128), Expect = 7e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || ||||| ||||||||||| ||||| | ||| || || ||||| || ||||| | Sbjct 62771 CATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCT 62712 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| |||||| |||||| || || | ||| | | ||| || |||| ||| | Sbjct 62711 TGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGA 62652 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||||| | ||||| | |||||| ||||| Sbjct 62651 TGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62615 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || ||||||||||| || || ||| ||||| |||| ||| | | ||||||| Sbjct 61487 ATACCCTCTTTATCTTGAATCTTTGCTTTAACATTCTCAATAGTATCGGCAGCTTCTACT 61428 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 |||| |||||| ||||| |||||||| ||||| | ||| || ||||| ||| Sbjct 61427 TCTAAAGTAATAGTTTTGCCAGTTAAAGTTTTCACAAAGATTTGCATCTTA 61377 >seq12660 Length=10627 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | || | || | ||| | ||||| ||||| | ||| || | | Sbjct 9746 ATACCTCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAA 9805 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| ||||| || |||| ||||||||||| ||||| | |||||| || ||| Sbjct 9806 CTTAATGTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGT 9865 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 | |||||||| ||||| |||||| |||||| || || | ||| | | ||| Sbjct 9866 AAAAAACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGCAGGTTCA 9925 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || |||||||||||||| | ||||| | |||||| | ||| Sbjct 9926 ACTTCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTTCAT 9975 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||| ||||| | || | || | ||| | ||||| ||||| | ||| || | | Sbjct 9293 ATACTTCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAA 9352 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| ||||| || |||| ||||||||||| ||||| | |||||| || ||| Sbjct 9353 CTTAATGTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGT 9412 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 | |||| ||| ||||| ||| | |||||| || || | ||| | ||| Sbjct 9413 AAAAAACCTTTTTTGTCTTGAATTCGAGCTTTTACGTTTTCAATTGTATCAGCAAGTTCA 9472 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || |||||||||||||| | ||||| | |||||| ||||| Sbjct 9473 ACTTCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 9522 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || ||| | |||| ||||| || || | ||||||||||| | || || Sbjct 9113 ATATTGTAGTCACTGAGAGTTCTTTCATTTTCTAACTCCTTACCAGCAAAAAACAAACTT 9172 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| |||| | |||||||| || || |||||| ||| || || || | | Sbjct 9173 TGTTGATCTAGTGGAACACCTTCTTTGTCGTGAATTTTAGCTTTCACGTTGTCAATTGTA 9232 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || | | ||| || |||| || |||||||||||||| | ||||| | |||||| | | Sbjct 9233 TCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATATTC 9292 Query 192535 AT 192536 || Sbjct 9293 AT 9294 >seq2327 Length=102395 Score = 109 bits (120), Expect = 1e-18 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||||||||| || | ||| || | ||| | |||| ||| ||| || || ||||||||| Sbjct 34857 ACCACCTCTGAGTCTTAAAACGAGATGAAGTGTAGACTCCTTTTGA-ATGTTATAATCAC 34915 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||||| | | |||| || || || || ||||||||||| | || || || || |||| Sbjct 34916 TTAATGTCCTTCCATCTTCTAACTGCTTTCCAGCAAAGATAAGTCGTTGCTGGTCTGGTG 34975 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 | || |||||||||||||| |||||| ||| ||||| Sbjct 34976 GAATACCTTCTTTATCTTGAATTTTAGCTTTAACATT 35012 >seq5503 Length=48954 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||||||||| |||||| ||||||||| ||||| ||| | | ||||| || Sbjct 3049 CCTTCTTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGCAGCCTCTACCTCA 2990 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| || || || ||||| ||||||| |||||||||||| || Sbjct 2989 AGGGTAATAGTCTTCCCTGTTAAGGTTTTAACAAATATCTGCATGTT 2943 Score = 93.3 bits (102), Expect = 8e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 |||||||||||||| || |||| |||| |||| ||||||||||||||| ||||||| | Sbjct 3724 ATATTATAATCAGACAAAGTTCTCCCATCTTCCAGTTGTTTACCAGCAAAAATTAATCGC 3665 Query 192415 TGTTGATCAGGTGGTATTCCT 192435 |||||||| || || |||||| Sbjct 3664 TGTTGATCTGGAGGAATTCCT 3644 >seq1713 Length=122895 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||||||||| |||||| ||||||||| ||||| ||| | | ||||| || Sbjct 120939 CCTTCTTTATCTTGAATTTTAGCTTTTACATTTTCTATAGTATCAGCAGCCTCTACCTCA 120880 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| || || || ||||| ||||||| |||||||||||| || Sbjct 120879 AGGGTAATAGTCTTCCCTGTTAAGGTTTTAACAAATATCTGCATGTT 120833 Score = 93.3 bits (102), Expect = 8e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 |||||||||||||| || |||| |||| |||| ||||||||||||||| ||||||| | Sbjct 121723 ATATTATAATCAGACAAAGTTCTCCCATCTTCCAGTTGTTTACCAGCAAAAATTAATCGC 121664 Query 192415 TGTTGATCAGGTGGTATTCCT 192435 |||||||| || || |||||| Sbjct 121663 TGTTGATCTGGAGGAATTCCT 121643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984216172896600