Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq266 140 6e-28 seq24 136 7e-27 seq12660 122 2e-22 seq2327 100 5e-16 seq5503 95.1 2e-14 seq1713 95.1 2e-14 >seq266 Length=263831 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | ||| | |||| ||| | ||||| |||||| ||| |||||||| Sbjct 46240 CCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTC 46299 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || || || ||||||||||||||||| || | ||||| || ||||| Sbjct 46300 AGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 46359 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||| ||||| |||||| ||| ||||| |||||||| | | ||| || Sbjct 46360 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACC 46419 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | || |||||||| |||||||| ||||||| ||||| ||||| Sbjct 46420 TCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | ||| | || | || | || | |||||| ||| |||||||| Sbjct 46465 ATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCG 46524 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | || || || ||||||||||||||||| || | ||||| || ||| Sbjct 46525 CTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 46584 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| ||| ||||| |||||||| | | ||| Sbjct 46585 GGGATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCG 46644 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || |||||||| |||||||| ||||||| |||||| ||||| Sbjct 46645 ACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | ||| | || | || | || | |||||| ||| |||||||| Sbjct 46693 ATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCG 46752 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | || || || ||||||||||||||||| || | ||||| || ||| Sbjct 46753 CTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 46812 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| ||| ||||| |||||||| | | ||| Sbjct 46813 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCA 46872 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||||||||| |||||||| ||||||| ||||| ||||| Sbjct 46873 ACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | ||| | || | || | || | |||||| ||| |||||||| Sbjct 46921 ATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCG 46980 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | || || || ||||||||||||||||| || | ||||| || ||| Sbjct 46981 CTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 47040 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| ||| ||||| |||||||| | | ||| Sbjct 47041 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCA 47100 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||||||||| |||||||| ||||||| ||||| ||||| Sbjct 47101 ACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 47150 Score = 89.7 bits (98), Expect = 9e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||||||||| ||||| ||| ||||| |||||||| | | ||| ||||| Sbjct 48563 CCTTCTTTATCTTGAATTTTTGCTTTCACATTTTCAATAGTATCAGCAGCTTCAACTTCC 48622 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAAAA 172082 | || |||||||| || |||| ||||||| || ||||||||||| |||||| || Sbjct 48623 AAGGTGATGGTTTTCCCTGTTAGAGTTTTAACAAAAATCTGCATTTTTTTATAATAA 48679 >seq24 Length=448628 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | ||| | || | ||| | || | ||||| |||||| || || Sbjct 62616 ATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCA 62557 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||| | || | || || ||||| ||||||||||||||||| | |||||| || ||| Sbjct 62556 CTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGT 62497 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| |||||| || || ||||| | | ||| Sbjct 62496 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 62437 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| |||||||||||||| | ||||| | ||||| ||||| Sbjct 62436 ACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | ||| | || | ||| | || | ||||| ||| || ||||| Sbjct 62160 ATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCA 62101 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||| | || | || || ||||| ||||||||||||||||| | ||||||||| ||| Sbjct 62100 CTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGT 62041 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| |||||| |||||| || || ||||| | | ||| Sbjct 62040 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 61981 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || |||||||||||||| | ||||| | ||||| ||||| Sbjct 61980 ACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | ||| | || | ||| | || | ||||| |||||| || || Sbjct 62388 ATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCA 62329 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||| | || | || || ||||| ||||||||||||||||| | |||||| || ||| Sbjct 62328 CTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGT 62269 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| |||||| || || ||||| | | ||| Sbjct 62268 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 62209 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || |||||||||||||| | ||||| | ||||| ||||| Sbjct 62208 ACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| | ||| | || | ||| | |||| ||||| ||| || || || Sbjct 62841 CCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTG 62782 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || || ||||| ||||||||||||||||| | ||| ||||| ||||| Sbjct 62781 AGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 62722 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || ||||| |||||| |||||| || || ||||| | | ||| || Sbjct 62721 ATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 62662 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||| |||||||||||||| | ||||| | ||||| ||||| Sbjct 62661 TCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62615 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || ||||||||||| || || ||| ||||| |||||||| | | ||||||| Sbjct 61487 ATACCCTCTTTATCTTGAATCTTTGCTTTAACATTCTCAATAGTATCGGCAGCTTCTACT 61428 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 |||| |||||| ||||| |||||||| ||||| | || || ||||| ||| Sbjct 61427 TCTAAAGTAATAGTTTTGCCAGTTAAAGTTTTCACAAAGATTTGCATCTTA 61377 >seq12660 Length=10627 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | ||| | || | ||| | ||||| ||||| || ||| || | Sbjct 9746 ATACCTCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAA 9805 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||| | || || || || |||| ||||||||||||||||| | ||||||||| ||| Sbjct 9806 CTTAATGTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGT 9865 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 | |||||||| ||||| |||||| |||||| || || ||||| | | ||| Sbjct 9866 AAAAAACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGCAGGTTCA 9925 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || |||||||||||||| | ||||| | ||||| | ||| Sbjct 9926 ACTTCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTTCAT 9975 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||| ||||| | ||| | || | ||| | ||||| ||||| || ||| || | Sbjct 9293 ATACTTCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAA 9352 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||| | || || || || |||| ||||||||||||||||| | ||||||||| ||| Sbjct 9353 CTTAATGTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGT 9412 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 | |||| ||| ||||| ||| | |||||| || || ||||| | ||| Sbjct 9413 AAAAAACCTTTTTTGTCTTGAATTCGAGCTTTTACGTTTTCAATTGTATCAGCAAGTTCA 9472 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || |||||||||||||| | ||||| | ||||| ||||| Sbjct 9473 ACTTCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 9522 >seq2327 Length=102395 Score = 100 bits (110), Expect = 5e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| |||| ||| || | ||| | |||| ||| || ||| |||||||| Sbjct 34857 ACCACCTCTGAGTCTTAAAACGAGATGAAGTGTAGACTCCTTTTGAATGTTATAATCACT 34916 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | | | | || || || || || |||||||| || | || || ||||| ||||| Sbjct 34917 TAATGTCCTTCCATCTTCTAACTGCTTTCCAGCAAAGATAAGTCGTTGCTGGTCTGGTGG 34976 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011 || |||||||||||||| |||||| ||| ||||| || ||||||| Sbjct 34977 AATACCTTCTTTATCTTGAATTTTAGCTTTAACATTCTCGATTGTATCTG 35026 >seq5503 Length=48954 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||||||||| |||||| ||||||||| ||||||||| | | ||||| || Sbjct 3049 CCTTCTTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGCAGCCTCTACCTCA 2990 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| || || || ||||| ||||||| ||||||||||| || Sbjct 2989 AGGGTAATAGTCTTCCCTGTTAAGGTTTTAACAAATATCTGCATGTT 2943 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| || |||| || | || |||| ||||||||||||||||||||||| Sbjct 3725 AATATTATAATCAGACAAAGTTCTCCCATCTTCCAGTTGTTTACCAGCAAAAATTAATCG 3666 Query 171947 CTGTTGGTCAGGTGGTATTCCT 171968 |||||| || || || |||||| Sbjct 3665 CTGTTGATCTGGAGGAATTCCT 3644 >seq1713 Length=122895 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||||||||| |||||| ||||||||| ||||||||| | | ||||| || Sbjct 120939 CCTTCTTTATCTTGAATTTTAGCTTTTACATTTTCTATAGTATCAGCAGCCTCTACCTCA 120880 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| || || || ||||| ||||||| ||||||||||| || Sbjct 120879 AGGGTAATAGTCTTCCCTGTTAAGGTTTTAACAAATATCTGCATGTT 120833 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| || |||| || | || |||| ||||||||||||||||||||||| Sbjct 121724 AATATTATAATCAGACAAAGTTCTCCCATCTTCCAGTTGTTTACCAGCAAAAATTAATCG 121665 Query 171947 CTGTTGGTCAGGTGGTATTCCT 171968 |||||| || || || |||||| Sbjct 121664 CTGTTGATCTGGAGGAATTCCT 121643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904899352192800