Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq48 621 1e-172 seq2421 98.7 3e-15 seq6211 91.5 4e-13 seq1763 86.0 2e-11 seq323 86.0 2e-11 >seq48 Length=395687 Score = 621 bits (688), Expect = 1e-172 Identities = 599/762 (79%), Gaps = 14/762 (2%) Strand=Plus/Minus Query 242142 CACATTAACCGAATTATAAAAGATAATAATATTACACTAAAAATAACAAGAATACGACAC 242201 || || ||| | ||| | || ||||||||||| ||| ||||||||||||||||| |||| Sbjct 7618 CATATCAACAGGATTGTTAATGATAATAATATAACATTAAAAATAACAAGAATATGACAT 7559 Query 242202 GAACCAGTTAAACGATTTGGTAAGGATATAGATATAAACGCAAATATAAAGAAATTTTAC 242261 ||||||| ||| |||||||||| || ||| |||| || ||| |||| |||| ||| Sbjct 7558 GAACCAGAAAAAAGATTTGGTAAAGAAATAAATATTAATCAAAAATTAAAAGAATTCTAC 7499 Query 242262 GAAGAACTGAAAAAATATAAATTAGAAGATATAATTTGTATTGATGAAACGAGTATAAAA 242321 || ||| | |||||| |||||||||||||||| || ||||| |||||||| ||||||| Sbjct 7498 GATGAAATTAAAAAACATAAATTAGAAGATATTATATGTATAGATGAAACAAGTATAAGT 7439 Query 242322 TCTTTACAAAAAAGACATCATTGTTATAGTGAAAAGGGGAAAAGATGTGTAATAAAAACA 242381 | | |||||| ||||||| || ||||||||| || ||||||||||||||||||||| Sbjct 7438 GGTCTTCAAAAA-GACATCAATGCTATAGTGAATTAGGAAAAAGATGTGTAATAAAAACA 7380 Query 242382 CAATCACAAGAAGTATTCAAAAAATATACAGGAATATTTGCTATTTCTGTAAATGGAGTT 242441 ||||| |||||||||||||||||||| || || |||||||| || ||| |||||||| Sbjct 7379 CAATCGCAAGAAGTATTCAAAAAATACACTGGTATATTTGCAATATCTTATAATGGAGTA 7320 Query 242442 GAAGGGTGGGATTTATATGAAAAAAGCGGAATAAATACAGATAGATTAGTAGAGTTTTTA 242501 ||| |||||||||||||||||| || || |||| |||||| || || |||||| Sbjct 7319 TTAGGTTGGGATTTATATGAAAAAGATGGTATTAATAGTGATAGACTATATGAATTTTTA 7260 Query 242502 GAAAAACATATAACAGAAAAT-TACAAAAATAAATTAATAATTTTAGACAATGCAAGTAG 242560 ||||||||||| ||| |||| |||||||||||||||||| ||||||| ||||||||||| Sbjct 7259 GAAAAACATATTACAAAAAAAATACAAAAATAAATTAATATTTTTAGATAATGCAAGTAG 7200 Query 242561 TCATAGAAATCAACGAATAAAAGATTTGGTTAATAAACATAATAATATTTTATATGCGGT 242620 |||||||||| || ||| ||||| || | ||||| ||||||| | |||||| | || Sbjct 7199 TCATAGAAATGAAAAAATTAAAGAATTACTAAATAAGCATAATACATTATTATATTCAGT 7140 Query 242621 TCCATACCAACATTTTACAAATTCTATAGAAAATTATTTTAGTATGTTGAAATCACGATT 242680 ||| || ||||||||||| ||||| || |||||||| ||||||||| |||||||| |||| Sbjct 7139 TCCTTATCAACATTTTACGAATTCAATCGAAAATTACTTTAGTATGATGAAATCAAGATT 7080 Query 242681 ACAAAAATTAGATGGATTAACTCatacaaaactaaaggaaaatatagaaaatgtgataag 242740 ||||||||||||||| ||||| || | | || |||| ||||||| |||| || || | Sbjct 7079 ACAAAAATTAGATGGTTTAACACACAAAGAATTAAAAACAAATATAAAAAAAGTCATTAA 7020 Query 242741 taaaataccaaaagataaatataaaaataTTTTCAAAGGTGCTTATGAACGACCAGAAAA 242800 | ||||||||||| |||||| | ||||| | ||||| ||||| | || | ||||| Sbjct 7019 AGATATACCAAAAGAAAAATATGAGAATATAATTAAAGGAACTTATAATAGAACTGAAAA 6960 Query 242801 ATAT-ATACCAAA-----GAATAAAACACGAAAGGTTAAGAAGGATTATTTATAAATCTC 242854 |||| ||| ||| |||| || | ||| |||| || ||||||| ||| | | Sbjct 6959 ATATCATAAGAAACTTTCAAATAGAAGA-AAAACATTAAAAA--ATTATTTTTAATTTGC 6903 Query 242855 A---TTTCAAAATGGGCGTTTGAAATGAGAAAAGGTGTAAAA 242893 | || ||||| |||||| ||||| | |||||||||||| Sbjct 6902 ATATTTAAAAAATCAGCGTTTTAAATGTGCAAAGGTGTAAAA 6861 Score = 522 bits (578), Expect = 8e-143 Identities = 504/648 (78%), Gaps = 2/648 (0%) Strand=Plus/Minus Query 165076 TTAATGATAATAATATTACTTTGAAACTTACAAGAATAAGACACGAACCAGTAAAACGAT 165135 |||||||||||||||| || || ||| | ||||||||| |||| ||||||| |||| ||| Sbjct 7602 TTAATGATAATAATATAACATTAAAAATAACAAGAATATGACATGAACCAGAAAAAAGAT 7543 Query 165136 TTGGTAAAGATATAAATATTAATTCAAAAATAAAAGAGTTTTATGATGAAGTGAAAAAAT 165195 |||||||||| |||||||||||| |||| ||||||| || || |||||| | |||||| Sbjct 7542 TTGGTAAAGAAATAAATATTAATCAAAAATTAAAAGAATTCTACGATGAAATTAAAAAAC 7483 Query 165196 ACANNNNNNNNNNTATTATTTGTATTGATGAAACAAGCATAAAATCATTACAAAAACGCA 165255 | | |||||| ||||| ||||||||||| |||| | |||||| || Sbjct 7482 ATAAATTAGAAGATATTATATGTATAGATGAAACAAGTATAAGTGGTCTTCAAAAAGACA 7423 Query 165256 ATCGTTGTTATAGTAATAAAGGTAATCGTTGTGTAATAAAAACACAATCCCAAGAAGTAT 165315 || || |||||| | ||| || | |||||||||||||||||||| |||||||||| Sbjct 7422 -TCAATGCTATAGTGAATTAGGAAAAAGATGTGTAATAAAAACACAATCGCAAGAAGTAT 7364 Query 165316 TCAAAAAATATACTGGTGTATTTGCTATTTCGGTAAATGGTGTTATAAATTGGGATTTAT 165375 |||||||||| |||||| ||||||| || || ||||| || || ||||||||||| Sbjct 7363 TCAAAAAATACACTGGTATATTTGCAATATCTTATAATGGAGTATTAGGTTGGGATTTAT 7304 Query 165376 ATGAAAAAGGTGGAATAAATACAGATAGATTAATTGAGTTTTTAGAGCATAACATTACAA 165435 ||||||||| ||| || |||| |||||| || ||| |||||||| | | ||||||| Sbjct 7303 ATGAAAAAGATGGTATTAATAGTGATAGACTATATGAATTTTTAGAAAAACATATTACAA 7244 Query 165436 GTAAATTA-AGGAATAAATTAATTATTTTAGATAATGCTTCCGCTCATAGAAACGAAAGA 165494 ||| || | ||||||||||| ||||||||||||| ||||||||| |||| | Sbjct 7243 AAAAAATACAAAAATAAATTAATATTTTTAGATAATGCAAGTAGTCATAGAAATGAAAAA 7184 Query 165495 ATAAAAGCATTAGTAAATAAACATAATAATTTACTTTATGCGGTTCCTTATCAGCATTTT 165554 || |||| |||| ||||||| ||||||| ||| | ||| | ||||||||||| |||||| Sbjct 7183 ATTAAAGAATTACTAAATAAGCATAATACATTATTATATTCAGTTCCTTATCAACATTTT 7124 Query 165555 ACCAATTCCATAGAAAATTATTTTAGTATGTTGAAATCAAGATTACAAAAATTAGATGGG 165614 || ||||| || |||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 7123 ACGAATTCAATCGAAAATTACTTTAGTATGATGAAATCAAGATTACAAAAATTAGATGGT 7064 Query 165615 Ttaaagtatgaaaatctaaaagaaaatatccaaaaggtaataagtgaaataccgaaagaa 165674 |||| | || | ||||| |||||| |||| || || | || ||||| |||||| Sbjct 7063 TTAACACACAAAGAATTAAAAACAAATATAAAAAAAGTCATTAAAGATATACCAAAAGAA 7004 Query 165675 aaatatgaaaatatatTTAAGGGTGCTTATGAAAGACCAGAGAAATAT 165722 |||||||| |||||| |||| || ||||| | ||| | || |||||| Sbjct 7003 AAATATGAGAATATAATTAAAGGAACTTATAATAGAACTGAAAAATAT 6956 Score = 327 bits (362), Expect = 3e-84 Identities = 322/410 (79%), Gaps = 13/410 (3%) Strand=Plus/Plus Query 242493 GAGTTTTTAGAAAAACATATAACAGAAAATTACAAAAATAAATTAATAATTTTAGACAAT 242552 || ||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||| Sbjct 308924 GAATTTTTAGAAAAACATATTACAAAAAAATACAAAAATAAATTAATAATTTTAGATAAT 308983 Query 242553 GCAAGTAGTCATAGAAATCAACGAATAAAAGATTTGGTTAATAAACATAATAATATTTTA 242612 |||||||||||||||||| || ||| ||||| || | ||||| ||||||| | ||| Sbjct 308984 GCAAGTAGTCATAGAAATGAAA-AATTAAAGAATTACTAAATAAGCATAATACATTATTA 309042 Query 242613 TATGCGGTTCCATACCAACATTTTACAAATTCTATAGAAAATTATTTTAGTATGTTGAAA 242672 ||| | ||||| || ||||||||||| ||||| || |||||||| ||||||||| ||||| Sbjct 309043 TATTCAGTTCCTTATCAACATTTTACGAATTCAATCGAAAATTACTTTAGTATGATGAAA 309102 Query 242673 TCACGATTACAAAAATTAGATGGATTAACTCatacaaaactaaaggaaaatatagaaaat 242732 ||| ||||||||||||||||||| ||||| || | | || |||| |||||||||||| Sbjct 309103 TCAAGATTACAAAAATTAGATGGTTTAACACACAAAGAATTAAAAACAAATATAGAAAAA 309162 Query 242733 gtgataagtaaaataccaaaagataaatataaaaataTTTTCAAAGGTGCTTATGAACGA 242792 || || | | ||||||||||| |||||| | ||||| | ||||| ||||| | || Sbjct 309163 GTCATTAAAGATATACCAAAAGAAAAATATGAGAATATAATTAAAGGAACTTATAATAGA 309222 Query 242793 CCAGAAAAATAT-ATACCAAA-----GAATAAAACACGAAAGGTTAAGAAGGATTATTTA 242846 | ||||||||| ||| ||| |||| || | ||| |||| || ||||||| Sbjct 309223 ACTGAAAAATATCATAAGAAACTTTCAAATAGAAGA-AAAACATTAAAAA--ATTATTTT 309279 Query 242847 TAAATCTCA---TTTCAAAATGGGCGTTTGAAATGAGAAAAGGTGTAAAA 242893 ||| | || || ||||| ||||||| ||||| | |||||||||||| Sbjct 309280 TAATTTGCATATTTAAAAAATCGGCGTTTTAAATGCGCAAAGGTGTAAAA 309329 Score = 260 bits (288), Expect = 4e-64 Identities = 250/318 (79%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 165405 TTAATTGAGTTTTTAGAGCATAACATTACAAGTAAATTAAGGAATAAATTAATTATTTTA 165464 ||||| || |||||||| | | ||||||| |||| | ||||||||||| |||||| Sbjct 308919 TTAAT-GAATTTTTAGAAAAACATATTACAAAAAAATACAAAAATAAATTAATAATTTTA 308977 Query 165465 GATAATGCTTCCGCTCATAGAAACGAAAGAATAAAAGCATTAGTAAATAAACATAATAAT 165524 |||||||| ||||||||| |||| ||| |||| |||| ||||||| ||||||| Sbjct 308978 GATAATGCAAGTAGTCATAGAAATGAAA-AATTAAAGAATTACTAAATAAGCATAATACA 309036 Query 165525 TTACTTTATGCGGTTCCTTATCAGCATTTTACCAATTCCATAGAAAATTATTTTAGTATG 165584 ||| | ||| | ||||||||||| |||||||| ||||| || |||||||| ||||||||| Sbjct 309037 TTATTATATTCAGTTCCTTATCAACATTTTACGAATTCAATCGAAAATTACTTTAGTATG 309096 Query 165585 TTGAAATCAAGATTACAAAAATTAGATGGGTtaaagtatgaaaatctaaaagaaaatatc 165644 |||||||||||||||||||||||||||| |||| | || | ||||| |||||| Sbjct 309097 ATGAAATCAAGATTACAAAAATTAGATGGTTTAACACACAAAGAATTAAAAACAAATATA 309156 Query 165645 caaaaggtaataagtgaaataccgaaagaaaaatatgaaaatatatTTAAGGGTGCTTAT 165704 |||| || || | || ||||| |||||||||||||| |||||| |||| || ||||| Sbjct 309157 GAAAAAGTCATTAAAGATATACCAAAAGAAAAATATGAGAATATAATTAAAGGAACTTAT 309216 Query 165705 GAAAGACCAGAGAAATAT 165722 | ||| | || |||||| Sbjct 309217 AATAGAACTGAAAAATAT 309234 >seq2421 Length=99546 Score = 98.7 bits (108), Expect = 3e-15 Identities = 201/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 133291 AGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATAT 133350 |||||||||||| | ||||| | || ||||||||| | || ||||| || ||||| || Sbjct 31434 AGAAGTTCAACTACCAGAAGCAAGAGCATTTTATGGGTTTCAAATTGCAATTGAAAACAT 31493 Query 133351 CCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA 133410 ||| || | |||||| || ||||||||| ||| |||||| | | | ||| Sbjct 31494 CCACTCAGAAATGTATTCTTTACTCATTGATACTCTCATTAAAGATCCGATAGAAAAGTC 31553 Query 133411 CAAACTATTCAACGCCATT--AGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468 || |||| || || ||| | | | | || ||| || |||| ||| | | ||||| Sbjct 31554 AAATTTATTTAATGCAATTGAAACCA--TGCCCTGTGTTCAAAAAAAAGCAGTTTGGGCA 31611 Query 133469 ATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTA 133528 | |||||||| | | | |||| ||| || ||| | ||||| ||||||| | Sbjct 31612 CTAAAATGGATTAACAAAGATTGTGCTTCTTTCTCTGAACGTGTTGTTGCATTTGCTGCA 31671 Query 133529 GTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAA 133581 || || || |||||||| || | || ||| |||| |||||||||||||| Sbjct 31672 GTGGAAGGAATTTTTTTTTCAGGATC-TTTTGCAGCTATATTTTGGCTTAAAAA 31724 >seq6211 Length=42566 Score = 91.5 bits (100), Expect = 4e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 302604 ATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGC 302663 || ||| ||| ||| |||||||||||||||||||||| || | ||||| ||||| || Sbjct 34440 ATTACCTGTTTCAGAGGTTTTTACAGCTGTATCAATTAACCCTTCTCGACCTCCCATTGC 34499 Query 302664 ATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACG 302723 ||| || || | ||| || || || ||| | |||| | ||||| |||||||| Sbjct 34500 ATGAAAAAAGAATTCTGTAGGAGTAAGGCCAGCAAGATAGGAATTTTCAACAAAACCACG 34559 Query 302724 CGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTA 302783 | || || || || |||| ||||||| || || || || | | | || | Sbjct 34560 GGATTCAGGACCATAATCATCCTTGTTAAAGTGAGGAAGTGTTCTATGACGAAATCCAAA 34619 Query 302784 TGGGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 ||| ||||| || || ||||| |||||||| || Sbjct 34620 TGGTATACGTTTACCTTCAACATTCTGCTGACC 34652 >seq1763 Length=121226 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || ||||| ||||| ||| || ||||| || | || ||||||||||| ||| | | Sbjct 48669 GCAATAAGCCCACAAAGATTGCAAACATGAACACGATATGCATCAGATGCTTCAAACAAA 48728 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || | || || ||| ||||| || | ||| ||||||||||||||||||||| Sbjct 48729 CGCTCATTTAAAAATTGAGCAGCACCATGAGCAATTTGACAATCACGCTCCATTTCACCA 48788 Query 251524 AAACGAAGACCACCATC 251540 |||||||| |||||||| Sbjct 48789 AAACGAAGTCCACCATC 48805 >seq323 Length=248912 Score = 86.0 bits (94), Expect = 2e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 106901 TTTTTCATAGCAAAAGACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCC 106960 |||||||||||| |||||||| ||||| || | || | | | |||||| | Sbjct 232155 TTTTTCATAGCAGTTTCAGAACTCATTCCATAAAATATTTTCATTTGTCGTCCATCTCGC 232096 Query 106961 TCAATTAACTTACCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAA 107020 |||||||||| |||| | |||||| ||||| || | | || |||| ||| || ||| Sbjct 232095 TCAATTAACTCACCTCCACATTCATCATGTCCTGCTAGCATTCCTCCAAGCATAACAAAA 232036 Query 107021 TCAGCCCCGCCACCGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCATCACTA 107080 || || || | || || || || || ||||| ||||| || | |||||||||| Sbjct 232035 TCGGCTCCAGCTCCAAAAGCCTTTGCAATATCTCCAGGACATACACATCCACCATCAGAT 231976 Query 107081 ATAATAT 107087 ||||||| Sbjct 231975 ATAATAT 231969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471423173120692