Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq24 172 9e-38 seq266 170 3e-37 seq12660 141 1e-28 >seq24 Length=448628 Score = 172 bits (190), Expect = 9e-38 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| ||||||| | || || ||||| || ||| | || || |||| | | Sbjct 62388 TGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCTG 62447 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || |||||| |||||| ||| |||||||| |||||||| ||||||| Sbjct 62448 ATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAAC 62507 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| ||||| |||||||| ||| |||||| |||| || || |||| Sbjct 62508 AGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAATA 62567 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||||||||| || | ||| | || | |||||||||||||||| ||||||| Sbjct 62568 TTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGGTATGCAAATATT 62625 Score = 163 bits (180), Expect = 4e-35 Identities = 179/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | ||||| | || || ||||| || || | || || |||| | | Sbjct 62160 TGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCTG 62219 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || |||||| |||||| ||| |||||||| |||||||| ||||||| Sbjct 62220 ATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAAC 62279 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| ||||| |||||||| ||| |||||| |||| || || |||| Sbjct 62280 AGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAATA 62339 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||||||||| || | ||| | || | |||||||||||||||| ||||||| Sbjct 62340 TTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGGTATGCAAATATT 62397 Score = 154 bits (170), Expect = 2e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | ||||| | || || ||||| || || | || || |||| | | Sbjct 61932 TGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCTG 61991 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || |||||| |||||| ||| || ||||| |||||||| || |||| Sbjct 61992 ATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAAC 62051 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| ||||| |||||||| ||| |||||| |||| ||||| || | Sbjct 62052 AGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGATTACAACA 62111 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||||||||| || | ||| | || | |||||||||||||||| ||||||| Sbjct 62112 TTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGGTATGCAAATATT 62169 Score = 125 bits (138), Expect = 1e-23 Identities = 170/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| ||||||| | || || ||||| || ||| | || || |||| | | Sbjct 62616 TGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCTG 62675 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || |||||| |||||| ||| || ||||| |||||||| || || | Sbjct 62676 ATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAGC 62735 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| ||||| |||||||| ||| ||||| | | || || || | Sbjct 62736 AGCGTTTAATTTTTGCTGGTAAGCAATTAGAGGATGGGAGAACTCTCAGTGACTACAACA 62795 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG-TAAATAAAT 146266 | ||||||||||| || | ||| | || | ||||| ||||| || | |||| || Sbjct 62796 TTCAAAAAGAATCTACCCTTCATCTTGTCCTTCGATTGAGAGGTGGCTGAATATAT 62851 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| ||||| || ||||||||| | | || ||||| || || || ||||| ||| ||| Sbjct 61804 AGGTATTCCGCCAGATCAACAACGTTTAATCTTTGCTGGCAAGCAGTTAGAAGATGGTAG 61863 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 ||| |||| ||||| || || ||||||||||| || | ||| | || | |||||||| Sbjct 61864 AACATTAAGTGATTACAACATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAG 61923 Query 146252 AGGAGGTAAATAAATATT 146269 |||||||| ||||||| Sbjct 61924 AGGAGGTATGCAAATATT 61941 >seq266 Length=263831 Score = 170 bits (188), Expect = 3e-37 Identities = 182/240 (76%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | ||||| ||||| || ||||| || || | || || |||| | | Sbjct 46465 TGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCTG 46406 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| |||||| ||| |||||||| || ||||| ||||||| Sbjct 46405 ATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAAC 46346 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| |||||||| ||||| ||| ||||| | | |||||||| | Sbjct 46345 AACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACACTGAGTGATTATAACA 46286 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATTGA 146271 | |||||||| || ||| ||||| |||| | ||||||||||| || ||||| ||||| Sbjct 46285 TTCAAAAAGAGTCTACTCTCCATCTAGTTCTTCGATTAAGAGGGGG---ATAAAAATTGA 46229 Score = 154 bits (170), Expect = 2e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | ||||| ||||| || ||||| || || | || || |||| | | Sbjct 46693 TGCAAATATTCGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCTG 46634 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| |||||| ||| |||||||| || ||||| ||||||| Sbjct 46633 ATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAAC 46574 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| |||||||| ||||| ||| ||||| | | |||||||| | Sbjct 46573 AACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAACA 46514 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | |||||||| || || | || | || | ||||| ||||| |||| ||||||| Sbjct 46513 TTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGGTATGCAAATATT 46456 >seq12660 Length=10627 Score = 141 bits (156), Expect = 1e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || ||||||| | ||||| | || || ||||| || || | || || |||| | | Sbjct 9974 TGAAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACATTAGAAGTTGAACCTGCTG 9915 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| |||||| |||||| ||| |||||||| || ||| || |||| Sbjct 9914 ATACAATTGAAAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTTTTTTACCAGACCAAC 9855 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| ||||| ||||||| ||| ||||||| |||| | || ||| Sbjct 9854 AGCGTTTAATTTTTGCTGGTAAGGAATTAGAAGATGATAGAACATTAAGTTACTACAATG 9795 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||||||||| ||| | ||| | || | |||||||||||||||| ||||||| Sbjct 9794 TTCAAAAAGAATCTACTCTTCATCTTGTTCTTCGATTAAGAGGAGGTATGCAAATATT 9737 Score = 127 bits (140), Expect = 3e-24 Identities = 177/246 (72%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | ||||| | || || ||||| || || | || || |||| | | Sbjct 9521 TGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACATTAGAAGTTGAACTTGCTG 9462 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| |||||| | ||| ||| ||| |||| || ||| || |||| Sbjct 9461 ATACAATTGAAAACGTAAAAGCTCGAATTCAAGACAAAAAAGGTTTTTTACCAGACCAAC 9402 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| ||||| ||||||| ||| ||||||| |||| | || ||| Sbjct 9401 AGCGTTTAATTTTTGCTGGTAAGGAATTAGAAGATGATAGAACATTAAGTTACTACAATG 9342 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA--AATAAATAT- 146268 | ||||||||||| ||| | ||| | || | |||||||||||| ||| |||| || | Sbjct 9341 TTCAAAAAGAATCTACTCTTCATCTTGTTCTTCGATTAAGAGGAAGTATGAATATATTTG 9282 Query 146269 TGAAAA 146274 |||||| Sbjct 9281 TGAAAA 9276 Score = 89.7 bits (98), Expect = 8e-13 Identities = 166/242 (69%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 ||||| | ||||| | || || ||||| || || | || || |||| | ||||| Sbjct 9288 ATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCTGATACA 9229 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 ||| | || || ||| |||||| || |||||||| |||||| ||||||||||| Sbjct 9228 ATTGACAACGTGAAAGCTAAAATTCACGACAAAGAAGGTGTTCCACTAGATCAACAAAGT 9169 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 | ||||||| ||||| | ||||| || | ||||| | | || || ||||| ||| Sbjct 9168 TTGTTTTTTGCTGGTAAGGAGTTAGAAAATGAAAGAACTCTCAGTGACTACAATATTCAA 9109 Query 146217 AAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA----AATAAATATTGAA 146272 ||| ||| ||| | || | | | ||| || |||||||| ||||||| |||| Sbjct 9108 AAAAAATATACTCTTGATCTTTTTCTTCGAATAGAAGGAGGTATGCGAATAAAT-GTGAA 9050 Query 146273 AA 146274 || Sbjct 9049 AA 9048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785960856794720