Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq266 158 9e-34 seq24 138 9e-28 seq12660 102 6e-17 seq1713 100 2e-16 seq5503 96.9 3e-15 >seq266 Length=263831 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || || || | ||||| || || |||||||||||||||||||| Sbjct 46696 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46755 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | ||||| |||||| | ||||| | ||| ||||| || ||| Sbjct 46756 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 46815 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | ||| ||| ||| | || | ||| |||| | |||| || Sbjct 46816 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACC 46875 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || |||||||||||||| |||||||||||||| ||||| Sbjct 46876 TCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || || || | ||||| || || |||||||||||||||||||| Sbjct 46924 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46983 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | ||||| |||||| | ||||| | ||| ||||| || ||| Sbjct 46984 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 47043 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | ||| ||| ||| | || | ||| |||| | |||| || Sbjct 47044 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACC 47103 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || |||||||||||||| |||||||||||||| ||||| Sbjct 47104 TCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 47150 Score = 150 bits (166), Expect = 1e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 || ||| || || || || || || | ||| || || || |||||||||||||||||||| Sbjct 46236 TTATCCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATC 46295 Query 29616 -CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCG 29674 | || || | | | || || | ||||| |||||| | ||||| | ||| ||||| | Sbjct 46296 ACTCAGTGTTCTGCCA-TCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTG 46354 Query 29675 GCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 | || ||||| ||||||||||| | ||| ||| ||| | || | ||| |||| | ||| Sbjct 46355 GTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTT 46414 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || | || || |||||||||||||| |||||||||||||| ||||| Sbjct 46415 CGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || || || | ||||| || || |||||||||||||||||||| Sbjct 46468 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46527 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | ||||| |||||| | ||||| | ||| ||||| || || Sbjct 46528 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 46587 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | ||| ||| ||| | || | ||| |||| | |||| || Sbjct 46588 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACC 46647 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || |||||||||||||| |||||||| ||||| ||||| Sbjct 46648 TCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 29681 TACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||| ||||| ||||| |||||||| ||| ||| |||| | ||| |||| | ||| ||| Sbjct 48561 TACCTTCTTTATCTTG-AATTTTTGCTTTCACATTTTCAATAGTATCAGCAGCTTCAACT 48619 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || ||||| || |||| ||||||||||| ||||||||||| Sbjct 48620 TCCAAGGTGATGGTTTTCCCTGTTAGAGTTTTAACAAAAATCTGCATTTT 48669 >seq24 Length=448628 Score = 138 bits (152), Expect = 9e-28 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| || || || || || | |||||| ||||||||||||||||| || || || | Sbjct 62613 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62554 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | | | ||| || | ||| || |||||| | || || | || ||||| || || Sbjct 62553 AATGTT-CTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGG 62495 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| ||||||||||| |||||| | ||| || | || | || |||| | |||| | Sbjct 62494 AATACCTTCTTTGTCTTG-AATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAA 62436 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | ||| || ||||| ||||| | |||||| |||||||| ||||| Sbjct 62435 CCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 132 bits (146), Expect = 4e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| || || || || || | |||||| |||||||||||||||||||| ||||| | Sbjct 62157 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 62098 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 ||| || | | ||| || | ||| || |||||| | || || | || || || || || Sbjct 62097 AAT-GTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGG 62039 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| || |||||||| |||||| | ||| || | || | || |||| | |||| | Sbjct 62038 AATACCTTCCTTGTCTTG-AATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAA 61980 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | || || ||||| ||||| | |||||| |||||||| ||||| Sbjct 61979 CCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 132 bits (146), Expect = 4e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| || || || || || | |||||| ||||||||||||||||| || || || | Sbjct 62385 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62326 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | | | ||| || | ||| || |||||| | || || | || ||||| || || Sbjct 62325 AATGTT-CTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGG 62267 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| ||||||||||| |||||| | ||| || | || | || |||| | |||| | Sbjct 62266 AATACCTTCTTTGTCTTG-AATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAA 62208 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | || || ||||| ||||| | |||||| |||||||| ||||| Sbjct 62207 CCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || || || | |||||| || ||||||||||||||||| || || Sbjct 62841 CCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTG 62782 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | ||| || |||||| | || || | ||||| || || ||| Sbjct 62781 AGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 62722 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| |||||| | ||| || | || | || |||| | |||| || Sbjct 62721 ATACCTTCCTTGTCTTG-AATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAAC 62663 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || ||||| ||||| | |||||| |||||||| ||||| Sbjct 62662 CTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62615 Score = 102 bits (112), Expect = 6e-17 Identities = 93/115 (81%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||||||||| ||||| ||| |||| ||| ||| | || | ||| || | | ||||| Sbjct 61488 AATACCCTCTTTATCTTG-AATCTTTGCTTTAACATTCTCAATAGTATCGGCAGCTTCTA 61430 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 |||| | ||| ||||||||||||||||| ||||| ||||| || ||||| ||||| Sbjct 61429 CTTCTAAAGTAATAGTTTTGCCAGTTAAAGTTTTCACAAAGATTTGCATCTTAAA 61375 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| || || || || || | |||||| |||||||||||||||||||| ||||| | Sbjct 61929 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 61870 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | | | ||| || | || ||||||||| | || || | ||| ||||| ||||| Sbjct 61869 AATGTT-CTACCATCTTCTAACTGCTTGCCAGCAAAGATTAAACGTTGTTGATCTGGCGG 61811 Query 29679 AATACC 29684 |||||| Sbjct 61810 AATACC 61805 >seq12660 Length=10627 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| || || || || || | |||||| || ||||||||||||| || || | | Sbjct 9749 CCTCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTT 9808 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | | | ||| || | || || |||||| | || || | || || || || Sbjct 9809 AATGTT-CTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAA 9867 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || ||| ||||||||||| |||||| | ||| || |||| | || |||| | |||| | Sbjct 9868 AAAACCTTCTTTGTCTTG-AATTTTAGCTTTTACGTTTTCAATTGTATCAGCAGGTTCAA 9926 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | || || ||||| ||||| | |||||| |||||||| | ||| Sbjct 9927 CTTCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTTCAT 9975 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 29562 TCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAAT-CCGCAA 29620 ||| || || || || || | |||||| || ||||||||||||| || || | | || Sbjct 9298 TCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTTAA 9357 Query 29621 TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAA 29680 | || | | ||| || | || || |||||| | || || | || || || || || Sbjct 9358 T-GTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAA 9416 Query 29681 TACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||| | ||||||||| |||| | ||| || |||| | || |||| |||||| ||| Sbjct 9417 AACCTTTTTTGTCTTG-AATTCGAGCTTTTACGTTTTCAATTGTATCAGCAAGTTCAACT 9475 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| ||||| | |||||| |||||||| ||||| Sbjct 9476 TCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 9522 >seq1713 Length=122895 Score = 100 bits (110), Expect = 2e-16 Identities = 89/109 (82%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 29682 ACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 ||| ||||| ||||| |||||| | ||| ||| |||||| ||| |||| | ||||| | Sbjct 120940 ACCTTCTTTATCTTG-AATTTTAGCTTTTACATTTTCTATAGTATCAGCAGCCTCTACCT 120882 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||| || ||||| || || |||||||||||||||||||||||||| || Sbjct 120881 CAAGGGTAATAGTCTTCCCTGTTAAGGTTTTAACAAATATCTGCATGTT 120833 >seq5503 Length=48954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 29682 ACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 ||| ||||| ||||| | ||| ||| ||| |||||| ||| |||| | ||||| || Sbjct 3050 ACCTTCTTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGCAGCCTCTACCTC 2991 Query 29742 AAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || ||||| || || |||||||||||||||||||||||||| || Sbjct 2990 AAGGGTAATAGTCTTCCCTGTTAAGGTTTTAACAAATATCTGCATGTT 2943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385121002329156