Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4963 136 9e-27 seq48 100 7e-16 seq2883 86.0 1e-11 seq2421 86.0 1e-11 seq11801 84.2 5e-11 seq6211 84.2 5e-11 >seq4963 Length=54722 Score = 136 bits (150), Expect = 9e-27 Identities = 202/284 (71%), Gaps = 2/284 (1%) Strand=Plus/Minus Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 ||||| |||||||| |||| || | ||| || | || |||| |||| | | || || Sbjct 21676 AGAGCTCGTGATTTGTTTTTTGGTCTTTGGGTTCCCGACCTATTTATGAGAAGAGTAGAA 21617 Query 110898 GAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA-TGTATA 110956 || || || |||||||| | |||||||||||| | ||||||| || |||| ||| || Sbjct 21616 GAGAAAGGTATGTGGTCATTAATGTGTCCTCATGAATGTCCTGGTTTAGCTGACTGT-TA 21558 Query 110957 TGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA 111016 ||| |||| || ||||| | || | |||||||||| ||||| | | | ||||| Sbjct 21557 TGGGGAAGAATTCGAAGAGTTGTATCAGAAATATGAAAGCGAAGGGCGATATAGAAAACA 21498 Query 111017 AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCC 111076 ||||||||||||| | | ||||| || | ||||| || || |||||||| || Sbjct 21497 AATTCCAGCTCAAAAGTTGTGGTTTGCGATTTTAGAATCCCAGACAGAGACTGGAACCCC 21438 Query 111077 TTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAA 111120 ||| || | ||||||||| | ||| | ||| |||||||| Sbjct 21437 TTACATGCTTTATAAAGATAGTTGCAATAGAAAAAGTAATCAAA 21394 >seq48 Length=395687 Score = 100 bits (110), Expect = 7e-16 Identities = 183/265 (69%), Gaps = 11/265 (4%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || |||||||| ||||| ||||| ||| |||||| |||| | || | || |||||| Sbjct 231155 GACTTTATTGACAAAGACCTGATTTTTTTCTCTAATGTTGATAATGATAGATCAATTCCT 231214 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGAT--TATATTCAGTTGTTTCAAAA 279923 | || || || || ||||| ||||| | | ||| | |||| |||| || ||| Sbjct 231215 TCAATGATTGACGGATTTAAACCATCACAAAGAATGATCCTGTATT--GTTGCTTTAAAC 231272 Query 279924 GA-----AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACA 279978 || | ||| |||||| | ||| | || |||| ||||||||||||||| | Sbjct 231273 GAGGTAGACATTCT--AAGGAAGTAAAAGTTTCCCAACTAGCCGGTTATGTTTCAGAAAA 231330 Query 279979 TGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGA 280038 ||| || ||||||||||||||||| || || || |||||| | ||| | || ||| | Sbjct 231331 CACAGACTACCATCACGGTGAAGCGTCACTACAGGGGGCTATTATTGGTATGGCACAAAA 231390 Query 280039 TTTTATGGCTTCAAACAACTTAAAT 280063 ||| | ||| || ||| | ||| Sbjct 231391 CTTTCCCGGTTCTAATAACATCAAT 231415 Score = 89.7 bits (98), Expect = 1e-12 Identities = 258/389 (66%), Gaps = 25/389 (6%) Strand=Plus/Plus Query 279068 ATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCT-CAAGAATGTGCTTT 279126 ||||| ||||| | || ||| ||||| ||||| ||||| ||| || || | Sbjct 230132 ATTCCTAAACTAAAGGACGCATTGTGGGCCGGAGGGAAAAAATCGGCAAAAACAAGCATC 230191 Query 279127 ATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGG 279186 ||| |||| ||||| ||||| || |||||| || | |||| | |||||| || Sbjct 230192 TTTT-TTACAGAGGGTGATTCGGCCCAATCATTTGTTATCGATGGTATTAGTGTTATCGG 230250 Query 279187 TCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAAAT 279246 | || | ||| || |||||||| | ||||| || | | |||| || || Sbjct 230251 GCAAGAAAGATACGGAGTATTTCCCCTTAGAGGAAAGCTGTTAAATGTGCGCAATGC--- 230307 Query 279247 CACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAACA 279306 ||| |||| ||| || ||||| | || | ||||| ||||| | || | Sbjct 230308 -----CAC-GGCT-----AAACAAATTAAAT-CAAACACCGAATTCCTTAATATCAAGAA 230355 Query 279307 AATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCAAGTTTACGATATGG--- 279363 ||||||||||||| | |||||| ||||||||||||| |||| | ||||| || Sbjct 230356 AATATTGGGATTAAAACAAGGTGTAAAATACAAAGATGTGTCAAAACTTCGATACGGATC 230415 Query 279364 TAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATACT 279423 | ||| |||||| || || || ||| |||||| ||| |||||||| || || | Sbjct 230416 TGTAATAATTATT---ACCGATCAGGATCCAGATGGTTCTCATATTAAAGGCTTGATCAT 230472 Query 279424 TAATTGGGTTGA-TACTTTCTGGCCAGAA 279451 |||| | | || |||||| ||||| ||| Sbjct 230473 TAATATGTTGGAGTACTTT-TGGCCCGAA 230500 >seq2883 Length=87214 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAG-GTAAAGAGGGTCG 305004 |||| ||||| ||||||||||| || | ||| || ||||||| ||||||| ||||| Sbjct 74143 CAAAAGTCTGGGAGACCTTTAAAATCAATCAAGCAGCG-ATTAAAGAGTAAAGAAGGTCG 74201 Query 305005 TATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACC 305064 || |||| ||| ||||||| ||||| ||||||||| ||| | ||| || || || Sbjct 74202 ACTTAGAGGAAATTTAATGGGGAAACGAGTTGATTTTTCAGCACGTGCTGTCATTACTCC 74261 Query 305065 TGATTCTCAAATTAGTC-TTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAA 305123 |||| || || |||| | || | || | ||| || | |||||| | || |||| Sbjct 74262 TGATCCT-AATTTAGACATTGACCAAGTTGGAACACCTAAAACAATTGCAATGAATCTAA 74320 Query 305124 CATTTCCAGA 305133 ||| ||| || Sbjct 74321 CATATCCTGA 74330 >seq2421 Length=99546 Score = 86.0 bits (94), Expect = 1e-11 Identities = 204/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 131633 TTCATTCAAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTT 131692 |||| ||||||| || | | || |||| || | | || || |||||| || || Sbjct 31426 TTCAGTCAAGAAGTTCAACTACCAGAAGCAAGAGCATTTTATGGGTTTCAAATTGCAATT 31485 Query 131693 GAATCTATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGAT 131752 ||| || || || |||||||| ||| | ||||| | ||| ||||| || ||| Sbjct 31486 GAAAACATCCACTCAGAAATGTATTCTTTACTCATTGATACTCTCATTAAAGATCC-GAT 31544 Query 131753 GATAAAAATAAA--TTATTTGATGCTGTAAATAA-ATTTCCTGCAATTAAAAAGAAAGCA 131809 | |||| | || |||||| |||| | | | || |||| | ||||| |||||| Sbjct 31545 -AGAAAAGTCAAATTTATTTAATGCAATTGAAACCATGCCCTGTGTTCAAAAA-AAAGCA 31602 Query 131810 GAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCT 131869 | ||||| | ||||||||| | | |||| ||| ||| ||| | | |||| || Sbjct 31603 GTTTGGGCACTAAAATGGATTAACAAAGATTGTGCTTCTTTCTCTGAACGTGTTGTTGCA 31662 Query 131870 TTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAG 131929 |||||| || ||||| || || |||||||| |||| ||||| ||||||||||| Sbjct 31663 TTTGCTGCAGTGGAAGGAATTTTTTTTTCAGGATCTTTTGCAGCTATATTTTGGCTTAAA 31722 Query 131930 AA 131931 || Sbjct 31723 AA 31724 >seq11801 Length=12939 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/145 (74%), Gaps = 8/145 (6%) Strand=Plus/Minus Query 167201 AAATATTTCAAAAGAGCACCTAAA---ATCTTTATTAATTATCATTACACCACCAGCATT 167257 ||||| || |||||||||| | || ||| | | | | |||||| ||||||||||| Sbjct 6135 AAATACTTGAAAAGAGCACATTAATGTATCATCAACACTCATCATT---CCACCAGCATT 6079 Query 167258 ATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAA 167316 || || || | | || || || |||||||| |||| || ||||| | ||| || || Sbjct 6078 GTCAAACTC-TCCACAATAGTTAGGTGCTGAGAATAATGTCACTAACTGACGTTTCGCAA 6020 Query 167317 ATAATTCATAACCATCTTCAACAAC 167341 | ||||||||||||||||| ||||| Sbjct 6019 AGAATTCATAACCATCTTCGACAAC 5995 >seq6211 Length=42566 Score = 84.2 bits (92), Expect = 5e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 305432 ACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAG 305491 || ||||||||||| ||||||||||||||||||||||| |||||||| || ||||||| | Sbjct 36479 ACTCCTTATAATGCTGATTTTGATGGAGATGAAATGAACATGCATGTTCCACAATCAATG 36420 Query 305492 G 305492 | Sbjct 36419 G 36419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186494750488276