Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq266 118 7e-22 seq24 109 4e-19 seq12660 91.5 1e-13 >seq266 Length=263831 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || || | || | ||| ||||| ||||||||| ||||| ||||| Sbjct 46240 CCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTC 46299 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || || || ||||| || |||||||||||||| || |||||| | || Sbjct 46300 AGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 46359 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| ||||| |||| |||| ||| | || || | ||| || Sbjct 46360 ATACCTTCTTTGTCTTGGATTTTAGCTTTC-ACATTGTCAATAGTATCAGCAGGTTCGAC 46418 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || ||||| ||||| ||||| || |||||| Sbjct 46419 CTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCATA 46467 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | || | || || || ||||||||| ||||| |||||| Sbjct 46467 ACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCT 46526 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || || ||||| || |||||||||||||| || |||||| | || Sbjct 46527 CAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 46586 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| |||| |||| ||| | || || | ||| | Sbjct 46587 GATACCTTCTTTGTCTTGGATTTTAGCTTTC-ACATTGTCAATAGTATCAGCAGGTTCGA 46645 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || ||||| ||||| || || || |||||| Sbjct 46646 CCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCATA 46695 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | || | || || || ||||||||| ||||| |||||| Sbjct 46695 ACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCT 46754 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || || ||||| || |||||||||||||| || |||||| | || Sbjct 46755 CAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 46814 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| |||| |||| ||| | || || | ||| | Sbjct 46815 AATACCTTCTTTGTCTTGGATTTTAGCTTTC-ACATTGTCAATAGTATCAGCAGGTTCAA 46873 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || ||||| ||||| ||||| || |||||| Sbjct 46874 CCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCATA 46923 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | || | || || || ||||||||| ||||| |||||| Sbjct 46923 ACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCT 46982 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || || ||||| || |||||||||||||| || |||||| | || Sbjct 46983 CAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 47042 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| |||| |||| ||| | || || | ||| | Sbjct 47043 AATACCTTCTTTGTCTTGGATTTTAGCTTTC-ACATTGTCAATAGTATCAGCAGGTTCAA 47101 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || ||||| ||||| ||||| || |||||| Sbjct 47102 CCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCATA 47151 >seq24 Length=448628 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| || | || | ||| || || |||||||| |||||||| || | Sbjct 62841 CCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTG 62782 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || ||||| || || |||||||| ||||||||||| ||| | || Sbjct 62781 AGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 62722 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| |||||| | || || | ||| | || || | ||| || Sbjct 62721 ATACCTTCCTTGTCTTGAATTTT-AGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAAC 62663 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| |||||||| || | ||||||||||| || |||||| Sbjct 62662 CTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCATA 62614 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || || | || | ||| || ||| |||||||| ||||||||||| Sbjct 62158 ACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACT 62099 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | || || ||||| || || |||||||| |||||||| || ||| | || Sbjct 62098 TAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGG 62039 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| |||||| | || || | ||| | || || | ||| | Sbjct 62038 AATACCTTCCTTGTCTTGAATTTT-AGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAA 61980 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| |||||||| || | ||||| ||||| || |||||| Sbjct 61979 CCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATA 61930 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || || | || | ||| || ||| |||||||| || ||||| || Sbjct 62386 ACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACT 62327 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | || || ||||| || || |||||||| |||||||| |||||| | || Sbjct 62326 TAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGG 62267 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | || || | ||| | || || | ||| | Sbjct 62266 AATACCTTCTTTGTCTTGAATTTT-AGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAA 62208 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| |||||||| || | ||||| ||||| || |||||| Sbjct 62207 CCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATA 62158 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || || | || | ||| || ||| |||||||| || ||||| || Sbjct 62614 ACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACT 62555 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | || || ||||| || || |||||||| |||||||| |||||| | || Sbjct 62554 TAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGG 62495 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | || || | ||| | || || | ||| | Sbjct 62494 AATACCTTCTTTGTCTTGAATTTT-AGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAA 62436 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || | ||||||||||| || |||||| Sbjct 62435 CCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCATA 62386 >seq12660 Length=10627 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33561 TTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAAT 33620 |||||| || ||||| || ||| || | ||| | || || | || || ||||||| Sbjct 9106 TTTTTGAATATTGTAGTCACTGAGAGTTCTTTCATTTTCTAACTCCTTACCAGCAAAAAA 9165 Query 33621 CAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGT 33680 ||||| || |||||| | || ||||||||||||||| |||||| |||| || | || Sbjct 9166 CAAACTTTGTTGATCTAGTGGAACACCTTCTTTGTCGTGAATTTTAGCTTTC-ACGTTGT 9224 Query 33681 C-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAA 33739 | | || || | ||| || || | |||||| |||||||| || | ||||| |||| Sbjct 9225 CAATTGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAA 9284 Query 33740 AGATCTGCATAGTT 33753 | || | |||| || Sbjct 9285 ATATATTCATACTT 9298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328620208830720