Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2327 122 2e-22 seq12660 102 2e-16 seq266 93.3 1e-13 >seq2327 Length=102395 Score = 122 bits (134), Expect = 2e-22 Identities = 113/142 (80%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 206246 TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCG 206305 |||||| ||| |||||||| |||||||| ||| || ||| ||| |||||||||| | Sbjct 35007 TAAAGCTAAA-ATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGACTTATCTTTG 34949 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 | ||||||||||| |||||||||||||| || ||||| ||| | || || ||||||| Sbjct 34948 CTGGAAAGCAGTTAGAAGATGGAAGGACATTAAGTGATTATAACATTCAAAAGGAGTCTA 34889 Query 206366 CTCTTCACCTTGTTTTGAGACT 206387 | ||||| || ||||| ||||| Sbjct 34888 CACTTCATCTCGTTTTAAGACT 34867 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 ||||| ||||| || ||||| |||||||| || || | ||||| ||| || |||||| Sbjct 34867 AGTCTTAAAACGAGATGAAGTGTAGACTCCTTTTGAATGTTATAATCACTTAATGTCCTT 34926 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| | ||||||||| || |||||||| ||||| || Sbjct 34927 CCATCTTCTAACTGCTTTCCAGCAAAGATAAGTCGTTGCTG 34967 >seq12660 Length=10627 Score = 102 bits (112), Expect = 2e-16 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 206176 ATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACA 206235 |||||| ||||| || || || ||||| ||||| || ||||| ||| | |||| ||| Sbjct 9969 ATATTTGTGAAAACCCTTACTGGTAAAACCATCACATTAGAAGTTGAACCTGCTGATACA 9910 Query 206236 GTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAG 206294 | ||| ||||| || ||| |||||||| |||||||| |||| || ||| || | Sbjct 9909 ATTGAAAACGTAAAAGCTAAA-ATTCAAGACAAAGAAGGTTTTTTACCAGACCAACAGCG 9851 Query 206295 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 206354 | || || || || ||| | || ||||||| || || || | ||||| || || Sbjct 9850 TTTAATTTTTGCTGGTAAGGAATTAGAAGATGATAGAACATTAAGTTACTACAATGTTCA 9791 Query 206355 GAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||||||||| |||||| Sbjct 9790 AAAAGAATCTACTCTTCATCTTGTT 9766 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| || || || ||||| ||||| || ||||| ||| | |||| Sbjct 9519 CAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACATTAGAAGTTGAACTTGCTGAT 9460 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| ||||| || | |||||||| ||| |||| |||| || ||| || Sbjct 9459 ACAATTGAAAACGTAAAAGCTCGA-ATTCAAGACAAAAAAGGTTTTTTACCAGACCAACA 9401 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || || || ||| | || ||||||| || || || | ||||| || Sbjct 9400 GCGTTTAATTTTTGCTGGTAAGGAATTAGAAGATGATAGAACATTAAGTTACTACAATGT 9341 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || ||||| ||||||||||| |||||| Sbjct 9340 TCAAAAAGAATCTACTCTTCATCTTGTT 9313 >seq266 Length=263831 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| | || || ||||| || || ||||| || ||| | |||| Sbjct 46919 CAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCTGAT 46860 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| || ||||| |||||||| ||| || || || Sbjct 46859 ACTATTGACAATGTGAAAGCTAAA-ATCCAAGACAAAGAAGGTATTCCACCAGATCAACA 46801 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || || || || || ||||| |||||||| || || || |||||| ||| | Sbjct 46800 ACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAACAT 46741 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || |||||||| || |||||||||||| Sbjct 46740 TCAAAAAGAGTCAACCCTTCACCTTGTT 46713 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| | || || ||||| || || ||||| || ||| | |||| Sbjct 47147 CAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCTGAT 47088 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| || ||||| |||||||| ||| || || || Sbjct 47087 ACTATTGACAATGTGAAAGCTAAA-ATCCAAGACAAAGAAGGTATTCCACCAGATCAACA 47029 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || || || || || ||||| |||||||| || || || |||||| ||| | Sbjct 47028 ACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAACAT 46969 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || |||||||| || |||||||||||| Sbjct 46968 TCAAAAAGAGTCAACCCTTCACCTTGTT 46941 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| ||||| || ||| | |||| || | || Sbjct 46679 AAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCTGATACTATTGACAAT 46620 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| |||||||| || || || ||| | | || || Sbjct 46619 GTGAAAGCTAAA-ATCCAAGACAAAGAAGGTATCCCACCAGATCAACAACGTTTGATTTT 46561 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || ||||| |||||||| || || || |||||| ||| | || |||||||| Sbjct 46560 TGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAACATTCAAAAAGAGTC 46501 Query 206364 TACTCTTCACCTTGTT 206379 || |||||||||||| Sbjct 46500 AACCCTTCACCTTGTT 46485 Score = 84.2 bits (92), Expect = 5e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| | || || ||||| ||||| ||||| || ||| | |||| Sbjct 46463 CAAATATTTGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCTGAT 46404 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| || ||||| |||||||| || || || || Sbjct 46403 ACTATTGACAATGTGAAAGCTAAA-ATCCAAGACAAAGAAGGTATCCCACCAGATCAACA 46345 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || || || || || ||||| |||||||| || || || ||||| ||| | Sbjct 46344 ACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACACTGAGTGATTATAACAT 46285 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || |||||||||||||| || || ||| Sbjct 46284 TCAAAAAGAGTCTACTCTCCATCTAGTT 46257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181504088275636