Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq266 116 4e-21 seq24 100 3e-16 >seq266 Length=263831 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | ||| | || | | ||||||||||||||||||| || ||||||| ||| | Sbjct 46476 CAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCT 46535 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | ||||||||| | | | || | ||| ||||||||||| || || ||||| Sbjct 46536 GCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTC 46595 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || ||||| ||||| | || | |||||| | || || || || | || Sbjct 46596 TTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGT 46655 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| ||||| | |||||| | ||| || ||||| Sbjct 46656 GATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | ||| | || | | ||||||||||||||||||| || ||||||| ||| | Sbjct 46704 CAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCT 46763 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | ||||||||| | | | || | ||| ||||||||||| || || ||||| Sbjct 46764 GCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 46823 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || ||||| ||||| | || | |||||| | || || || || | || Sbjct 46824 TTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGT 46883 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| ||||| | |||||| | || || ||||| Sbjct 46884 AATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | ||| | || | | ||||||||||||||||||| || ||||||| ||| | Sbjct 46932 CAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCT 46991 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | ||||||||| | | | || | ||| ||||||||||| || || ||||| Sbjct 46992 GCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 47051 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || ||||| ||||| | || | |||||| | || || || || | || Sbjct 47052 TTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGT 47111 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| ||||| | |||||| | || || ||||| Sbjct 47112 AATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 47150 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||||||||| || || |||| || | |||||| | ||||||||| | | Sbjct 46273 GACTCTTTTTGAATGTTATAATCACTCAGTGTTCTGCCATCTTCTAACTGTTTACCAGCA 46332 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | ||| ||||||||||| || || |||||||| || ||||| ||||| Sbjct 46333 AAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTCACA 46392 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | || || || || | || | ||||| ||||| | |||||| Sbjct 46393 TTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTA 46452 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 46453 ACAAATATTTGCAT 46466 >seq24 Length=448628 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | ||| | ||| | | | || ||||||||||| |||||||| || | || | Sbjct 62376 AATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTA 62317 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| | || ||||| | | | |||| ||||||||||||||| || || |||||| Sbjct 62316 CCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCT 62257 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || |||||| ||| | | || | ||||| | || || || || | ||| Sbjct 62256 TTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTG 62197 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||||||||| || ||||| | || || ||||| Sbjct 62196 ATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | ||| | ||| | | | || ||||||||||| |||||||| || | || | Sbjct 62604 AATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTA 62545 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| | || ||||| | | | |||| ||||||||||||||| || || |||||| Sbjct 62544 CCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCT 62485 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || |||||| ||| | | || | ||||| | || || || || | || Sbjct 62484 TTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTG 62425 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||||||||| || ||||||| || || ||||| Sbjct 62424 ATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | ||| | ||| | | | || ||||||||||||||||| || || | || | Sbjct 62148 AATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTA 62089 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| | || ||||| | | | |||| ||||||||| ||||| || || ||||| Sbjct 62088 CCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCC 62029 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || |||||| ||| | | || | ||||| | || || || || | ||| Sbjct 62028 TTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTG 61969 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||||||||| || ||||| | || || ||||| Sbjct 61968 ATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||||||||||||||| || | || | | ||| || | || ||||| | | Sbjct 62808 GATTCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCCTCTAATTGCTTACCAGCA 62749 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| |||||| || ||||| || || ||||| || || |||||| ||| | Sbjct 62748 AAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTTAGCTTTTACG 62689 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | || || || || | || | ||||||||||| || |||||| Sbjct 62688 TTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTT 62629 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 62628 ACAAATATTTGCAT 62615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476486590001760