Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq3103 98.7 3e-17 seq7308 95.1 4e-16 seq5488 95.1 4e-16 seq4057 95.1 4e-16 seq3828 95.1 4e-16 seq322 95.1 4e-16 seq273 95.1 4e-16 seq14 95.1 4e-16 >seq3103 Length=82262 Score = 98.7 bits (108), Expect = 3e-17 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 2764 TTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||| || ||| |||||||||||||||||| | ||||||||||||| ||||||||||||| Sbjct 55339 TTATAGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTT 55398 Query 2824 CAACCCCGGGCTTCAGC 2840 ||| |||||| ||| || Sbjct 55399 CAATCCCGGGTTTCGGC 55415 >seq7308 Length=34065 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 11437 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 11378 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 11377 CCGGGTTTCGGC 11366 >seq5488 Length=49083 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 41111 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 41052 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 41051 CCGGGTTTCGGC 41040 >seq4057 Length=66109 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 12109 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 12168 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 12169 CCGGGTTTCGGC 12180 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 49484 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 49425 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 49424 CCGGGTTTCGGC 49413 >seq3828 Length=69508 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 17873 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 17814 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 17813 CCGGGTTTCGGC 17802 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 37552 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 37611 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 37612 CCGGGTTTCGGC 37623 >seq322 Length=248940 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| | ||||||||||||| ||||||||||||||| Sbjct 82285 ATCGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCA 82344 Query 2826 ACCCCGGGCTTC 2837 | |||||| ||| Sbjct 82345 ATCCCGGGTTTC 82356 >seq273 Length=261676 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 144894 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 144953 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 144954 CCGGGTTTCGGC 144965 Score = 95.1 bits (104), Expect = 4e-16 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 2760 GTGTTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCC 2818 || ||||| || ||| |||||||||||||||||| | ||||||||||||| |||||||| Sbjct 158196 GTATTTATAAGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCC 158255 Query 2819 TGGTTCAACCCCGGGCTTCAGC 2840 |||||||| |||||| ||| || Sbjct 158256 TGGTTCAATCCCGGGTTTCGGC 158277 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 162853 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 162912 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 162913 CCGGGTTTCGGC 162924 >seq14 Length=486972 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 390498 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 390439 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 390438 CCGGGTTTCGGC 390427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15845974106820