Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq24 122 8e-23 seq266 107 2e-18 seq4963 98.7 9e-16 >seq24 Length=448628 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | |||||| | || || ||| | Sbjct 62159 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 62218 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | |||||| |||||| || ||||| ||||| || || ||||| Sbjct 62219 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62278 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| | || || ||| | ||||||| ||||| | || || |||||| Sbjct 62279 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62338 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||||||| ||||| | || | |||| |||||||| Sbjct 62339 ATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGG 62385 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || || ||| | ||||| | || || ||| | Sbjct 62387 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62446 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | |||||| |||||| || ||||| ||||| || || ||||| Sbjct 62447 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62506 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| | || || ||| | ||||||| ||||| | || || |||||| Sbjct 62507 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62566 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||||||| ||||| | || | |||| |||||||| Sbjct 62567 ATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGG 62613 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | |||||| | || || ||| | Sbjct 61931 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 61990 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | |||||| |||||| || || || ||||| || || || || Sbjct 61991 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAA 62050 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| | || || ||| | ||||||| ||||| | || |||||||| Sbjct 62051 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGATTACAAC 62110 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||||||| ||||| | || | |||| |||||||| Sbjct 62111 ATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGG 62157 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || || ||| | ||||| | || || ||| | Sbjct 62615 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62674 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | |||||| |||||| || || || ||||| || || || ||| Sbjct 62675 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAG 62734 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| | || || ||| | || |||| |||| | |||| || ||||| Sbjct 62735 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAGGATGGGAGAACTCTCAGTGACTACAAC 62794 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||| ||| ||||| | || | |||||||||| || Sbjct 62795 ATTCAAAAAGAATCTACCCTTCATCTTGTCCTTCGATTGAGAGGTGG 62841 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 25277 GGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 25336 ||||| ||||| ||||| ||| | | || | | ||||| || | ||||||| |||| Sbjct 61805 GGTATTCCGCCAGATCAACAACGTTTAATCTTTGCTGGCAAGCAGTTAGAAGATGGTAGA 61864 Query 25337 AATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 | | || |||||||| |||||||||||||||||| ||||| | || | |||| ||| Sbjct 61865 ACATTAAGTGATTACAACATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGA 61924 Query 25397 GGAGG 25401 ||||| Sbjct 61925 GGAGG 61929 >seq266 Length=263831 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| ||||| || ||| | ||||| | || |||||| | Sbjct 46694 ATGCAAATATTCGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46635 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| ||||| || ||||| ||||| || || ||||| Sbjct 46634 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 46575 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | || ||||| | ||||||| |||| | |||||||| || Sbjct 46574 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46515 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| || ||| |||| | || | |||||||||| || Sbjct 46514 ATTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGG 46468 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| ||||| || ||| | ||||| | || |||||| | Sbjct 46466 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46407 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| ||||| || ||||| ||||| || || ||||| Sbjct 46406 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 46347 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | || ||||| | ||||||| |||| | || ||||| || Sbjct 46346 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACACTGAGTGATTATAAC 46287 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAA 25405 ||||||||||| || || | ||| |||| | |||| ||||| ||| || Sbjct 46286 ATTCAAAAAGAGTCTACTCTCCATCTAGTTCTTCGATTAAGAGGGGGATAA 46236 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| ||||| || ||| | || || | || || ||| | Sbjct 46922 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 46863 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| ||||| || ||||| ||||| || || ||||| Sbjct 46862 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 46803 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | || ||||| | ||||||| |||| | |||||||| || Sbjct 46802 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46743 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| || ||| |||| | || | |||||||||| || Sbjct 46742 ATTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGG 46696 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| ||||| || ||| | || || | || || ||| | Sbjct 47150 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 47091 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| ||||| || ||||| ||||| || || ||||| Sbjct 47090 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 47031 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | || ||||| | ||||||| |||| | |||||||| || Sbjct 47030 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46971 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| || ||| |||| | || | |||||||||| || Sbjct 46970 ATTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGG 46924 >seq4963 Length=54722 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 136703 CCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCCACGA 136762 |||| | ||| |||| |||||||| | ||| | | |||| || ||| | | | Sbjct 15389 CCTTTTTCCAACCATAAAAATGTATAGCAGTTAAAGTAGAAAAGCTGGGTTCGCCTAAAA 15448 Query 136763 AAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAATA 136822 | | ||| | |||||| || ||||| ||| ||| ||| | ||||| ||||| || | || Sbjct 15449 ATACATTAAACGATTGACTTTGATCAATGAAAGCTCCTCTATCTGCAGCCATATTTATTA 15508 Query 136823 GTACTTTTTGCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGGAATTT 136882 | ||||||||| |||||||| || ||||| | | |||||| || | |||||||| Sbjct 15509 ATGATTTTTGCTTTATTTCCCACGCTGTTTTGTACAAAACCTTGATATCAGCCGGAATTT 15568 Query 136883 CATCGATATTCT 136894 |||| ||||||| Sbjct 15569 CATCAATATTCT 15580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444978030069120