Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq24 100 3e-16 seq266 89.7 5e-13 >seq24 Length=448628 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||||||||||||||| || |||| | || || | |||||||| ||||| Sbjct 62121 TCTTTTTGAATGTTGTAATCACTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAA 62062 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || || ||||| ||||| | |||| | ||||||| | ||| ||| |||| ||| Sbjct 62061 ATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTTACGTT 62003 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||| || | ||| ||||| | |||||| |||||||| || | |||||||| Sbjct 62002 GTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCAC 61943 Query 35725 AAATATCTGCAT 35736 |||||| ||||| Sbjct 61942 AAATATTTGCAT 61931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||||||||| || | |||| | | || || | |||||||| ||||| Sbjct 62805 TCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAA 62746 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || || ||||||||||| | |||| | ||||||| | ||| ||| |||| ||| Sbjct 62745 ATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTTACGTT 62687 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||| || | ||| ||||| | ||||| |||||||| || | ||||| || Sbjct 62686 GTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTAC 62627 Query 35725 AAATATCTGCAT 35736 |||||| ||||| Sbjct 62626 AAATATTTGCAT 62615 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||| ||||| || || |||| | || || | |||||||| ||||| Sbjct 62349 TCTTTTTGAATATTGTAGTCACTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAA 62290 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || || ||||| || || | |||| | || ||||| ||| ||| |||| ||| Sbjct 62289 ATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCT-TGAATTTTAGCTTTTACGTT 62231 Query 35666 GCCAC-CGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | || ||| || | ||| ||||| | |||||| |||||||| || | |||||||| Sbjct 62230 GTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCAC 62171 Query 35725 AAATATCTGCAT 35736 |||||| ||||| Sbjct 62170 AAATATTTGCAT 62159 >seq266 Length=263831 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||||||||| |||||| || ||||| | || || | ||| ||||| ||||| Sbjct 46731 CTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAA 46790 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||| || || || || | |||| | || ||||| ||| ||| || |||| | Sbjct 46791 AATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGAT-TTTAGCTTTCACAT 46849 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | || || | ||| ||||||| || || ||||| || || |||||||| | Sbjct 46850 TGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAA 46909 Query 35724 CAAATATCTGCAT 35736 ||||||| ||||| Sbjct 46910 CAAATATTTGCAT 46922 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||||||||| |||||| || ||||| | || || | ||| ||||| ||||| Sbjct 46959 CTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAA 47018 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||| || || || || | |||| | || ||||| ||| ||| || |||| | Sbjct 47019 AATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGAT-TTTAGCTTTCACAT 47077 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | || || | ||| ||||||| || || ||||| || || |||||||| | Sbjct 47078 TGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAA 47137 Query 35724 CAAATATCTGCAT 35736 ||||||| ||||| Sbjct 47138 CAAATATTTGCAT 47150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||||||||| |||||| || ||||| | || || | ||| ||||| ||||| Sbjct 46503 CTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAA 46562 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||| || || || || | || | | || ||||| ||| ||| || |||| | Sbjct 46563 AATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGAT-TTTAGCTTTCACAT 46621 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | || || | ||| ||||||| ||||| ||||| || || |||||||| | Sbjct 46622 TGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAA 46681 Query 35724 CAAATATCTGCAT 35736 | ||||| ||||| Sbjct 46682 CGAATATTTGCAT 46694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450675740013280