Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2421 161 1e-34 seq4963 129 8e-25 >seq2421 Length=99546 Score = 161 bits (178), Expect = 1e-34 Identities = 213/292 (73%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 39695 TTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCA 39754 ||||| ||||||||||| || ||||||||||| ||||| || || ||||| ||||| ||| Sbjct 31724 TTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGCA 31665 Query 39755 AATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAA 39811 |||||||||| | || | || | ||| || | ||||| || |||||||| Sbjct 31664 AATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCCCAA 31605 Query 39812 TCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTC- 39870 | ||||| || | ||||| ||||| ||||| || |||||||| | || ||||| Sbjct 31604 ACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACTTTTCT 31545 Query 39871 ATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTC 39930 ||| |||||||| ||||| || | | | |||||||||||| ||||||||||| Sbjct 31544 ATC-GGATCTTTAATGAGAGTATCAATGAGTAAAGAATACATTTCTGAGTGGATGTTTTC 31486 Query 39931 AATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||| || || ||||| || ||||| ||||||||| | | ||| || ||| Sbjct 31485 AATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGTTGAACTTCT 31434 Score = 120 bits (132), Expect = 4e-22 Identities = 156/214 (73%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| || |||||||| ||||| ||||| ||||| | ||||| |||||||| Sbjct 31317 TTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAACATGAGAGATAAAATAC 31258 Query 40064 TTTTCATCGGGTGTCAA--TTTATTCCAGTCATTGAT----ATCTTTTGATATATCTACT 40117 ||||| | || ||| ||| |||| || ||| ||| | | ||| ||| Sbjct 31257 TTTTCCTGAGGCTTCAGCTTTTCTTCC---CAATGAACTGCATCAGCAGCCAAATCAACT 31201 Query 40118 TCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATAT 40177 |||||| ||||||||||||| || || || | |||||||| ||||||||||| |||| Sbjct 31200 TCTTCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCATATATCTTTATAT 31141 Query 40178 TGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 || |||||||| | |||||| || ||||||| Sbjct 31140 TGAATTGGAAATAAAACAAACCTTCGGGGATTTT 31107 Score = 111 bits (122), Expect = 2e-19 Identities = 173/244 (71%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCA---TTTCACAATTCATTCCT 39499 || |||||||| ||| |||||| || ||||||||||| | ||| | ||||||||| Sbjct 32375 ATTAATCTATCAGCACAAAATTCAATATATGTTTTCATAAGACTTTTA---TTCATTCCT 32319 Query 39500 ATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTT 39559 | || | | |||| || ||| || | |||||| |||| || |||| || ||| Sbjct 32318 AAAAGATCACAGGGTAAAGACTCAGTCAAAAACTCAATTTCAATAGCTACAGCATCTCGA 32259 Query 39560 ATTATCGATGTTACTACCTCATCACTCGG--TGGATGCAATAAATGTTTAAACATTAAGC 39617 || || | ||||| || ||| || || | ||||| |||||| |||| | | Sbjct 32258 ATAATTTGTTTTACTCGTTCTTCAGAAGGCTTGTTTACAATA--TGTTTATACATAAGAC 32201 Query 39618 AGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTC 39677 | || ||||||||||||| |||||||||||||| || ||||| || || || || | || Sbjct 32200 ATGCAAAGTCACAATGTAAACCCTCATCTCTACTGATCAATTCATTTGAGAAAGTTACTC 32141 Query 39678 CAGG 39681 |||| Sbjct 32140 CAGG 32137 >seq4963 Length=54722 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGG 68768 |||||| | ||||||||| ||||| | |||||| | || |||||||| | || ||||| Sbjct 15781 ATTAACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAATAAATATTGTTAGTGTATGG 15840 Query 68769 TTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 ||| | |||||||| || || ||||||||||| || || || ||||||||||| || || Sbjct 15841 TTCAATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAGGCTGTTGGCATAGGAGCAAC 15900 Query 68829 CAATAAACTATTTCTAAGACCATG 68852 |||||||| |||| || |||||| Sbjct 15901 TAATAAACTGTTTCGAACACCATG 15924 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 || || || || ||||||||||| | || | ||| || |||||||||| |||||| || Sbjct 22089 TCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAAGGC 22148 Query 69715 TCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCA 69774 |||| || || || || || ||||| || || ||||||||||| | ||||| ||| Sbjct 22149 TCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTTGCA 22208 Query 69775 GTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGT 69827 || |||||| | ||||| | ||| ||||| || ||||| || | ||||||||| Sbjct 22209 GTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGT 22261 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68860 ATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCG 68919 ||||| ||||||| | | ||| | ||| | || | |||| |||||||| | ||| Sbjct 16061 ATTTTTGCTTTTAGTTCTGCCCAGTTCCACAAATTTGTTGGTGTCACATTCCACATATCA 16120 Query 68920 TATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGT 68979 ||||| || ||||| ||||| | ||| || | || | ||||||| || || | | Sbjct 16121 TATTGAAGTATTCCTTTACTAATAGGTGACCCTTGGTAACTCTCATAAGTCCCATCTTTT 16180 Query 68980 TCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 69039 ||||||| ||||||| ||| ||||||||||| |||||||||||||| ||||||| ||| Sbjct 16181 TCAGCTAATTCACAAGATGCTTCTAATGCACCATAATAAATTGTTTCAAAAATCTGTTTA 16240 Query 69040 TTGAG 69044 || || Sbjct 16241 TTAAG 16245 Score = 118 bits (130), Expect = 1e-21 Identities = 214/305 (70%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 ||||| || || || ||| ||| || || | || || |||| | || ||| | || Sbjct 22410 AGACCAATGCCACCAGCCCATTTTGAAATAATTGCGCATTGTTTAACAGTATCAAAAATT 22469 Query 69931 CCCTCTATGCTATCATCTAT-CAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTA 69988 || || || |||||| || | ||| | ||| || ||||||||| ||||| ||| | Sbjct 22470 CCTTCAATACTATCA-CTCTGCATAGCTAATAA-AAAACAGCTTGACATCTGAGGTCTGG 22527 Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 || || | ||| |||||||||||||| || ||||| ||||||||||| || | | || Sbjct 22528 GGGTGCCAGAATTGAATAATGTAGGAGAGGCATGAGTAAACCATTTTTCTGACATTAAAT 22587 Query 70049 TGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATC 70107 | |||||||| ||||| | || | ||| ||| ||| || || | | || | |||| Sbjct 22588 TATATGTTTCTATAGCAGCATCAAGATCTTCAC-CATGTATACCAACAGATACTCTCATC 22646 Query 70108 AACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCC 70167 ||||| || ||||| | || | |||||| ||| ||||| | || || ||| |||| Sbjct 22647 AACATGTGTTGAGGCCTCTCAGCAGTTTTACCATTAATTTTTAGCAAATAAGATCTTTCA 22706 Query 70168 AGAGT 70172 ||||| Sbjct 22707 AGAGT 22711 Score = 100 bits (110), Expect = 4e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACA-TCATCCAATCCAGGA 69552 ||||||||| ||| | | ||||||||| || ||| |||| ||| | || |||||| Sbjct 21520 TTTCATATTTCTGATACAACTCTTCGAATTCTTC-CCCATAACAGTCAGCTAAACCAGGA 21578 Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612 ||||||| |||||||| |||||||||| | | | || | |||| | |||||||||| Sbjct 21579 CATTCATGAGGACACATTAATGACCACATACCTTTCTCTTCTACTCTTCTCATAAATAGG 21638 Query 69613 TCGGGAATCCAAAGAGCTATAAAGAGATC 69641 ||||||| ||||||| | | ||| | ||| Sbjct 21639 TCGGGAACCCAAAGACCAAAAAACAAATC 21667 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||||||| ||| |||||||| || ||||| || || || || ||||| ||||| || | Sbjct 23684 CACTAAATTTTTTCTTTGTTTCTTTATGTAAGTTAGAAATAGCAATTCTTGCTGCAAGTA 23743 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 |||||| || ||||||| ||||| | ||| |||| ||| || || | || |||| Sbjct 23744 AAGCATAATCTGGATGTTTAGTAGTCATTGAAGCAGCTACTTCTGCGGCAAGAGTGTCTA 23803 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTC 70497 |||| ||| |||| ||| || | || ||||||||||| Sbjct 23804 GCTCTACAGTGGTAATTCCTGGGTACATGCCACGAATAACTTTC 23847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || || ||||| ||| |||| | ||| | || || ||| ||| | | || Sbjct 15395 TCCAACCATAAAAATGTATAGCAGTTAAAGTAGAAAAGCTGGGTTCGCCTAAAAATACAT 15454 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTA-TAATACTC 68559 | | ||||||||||||||| |||||||||||||||||||| ||||| |||| |||| | Sbjct 15455 TAAACGATTGACTTTGATCAATGAAAGCTCCTCTATCTGCAGCCATATTTATTAATGAT- 15513 Query 68560 TTTTGAGGAATTTCCCA 68576 ||||| |||||||| Sbjct 15514 TTTTGCTTTATTTCCCA 15530 Score = 86.0 bits (94), Expect = 9e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 ||| ||||||| |||||||| ||||||||||| ||| | |||||| || ||| || ||| Sbjct 20219 AATACCTGAACACCAATACCTATAGGTCTATGCCTCATGTTTGAATTTCGAGCCTCAGGA 20278 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG 69219 | || ||| | || |||||||| ||||| ||||||| || ||||| || Sbjct 20279 ACTGGGTAAAAGTTTCGATCTATAACCTTATTTAGATTTCTTGTTATCACTTTGGTGACA 20338 Query 69220 TCCTTTAGTTTGAGAAAATCAAATCGTCCA-TCTATAACAA 69259 | ||||| ||| ||||||| | |||| ||| |||||| Sbjct 20339 TACTTTAATTTCTTAAAATCATAAACTCCAGTCT-TAACAA 20378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686729207694240