Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2421 179 3e-40 seq2702 114 1e-20 >seq2421 Length=99546 Score = 179 bits (198), Expect = 3e-40 Identities = 224/300 (75%), Gaps = 14/300 (5%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| ||||||||||| || |||||||||||||||||||| || ||||| Sbjct 31432 CAAGAAGTTCAACTACCAGAAGCAAGAGCATTTTATGGGTTTCAAATTGCAATTGAAAAC 31491 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG 44032 || || || |||||||| | | || || ||||| ||| |||||| | || ||| Sbjct 31492 ATCCACTCAGAAATGTATTCTTTACTCATTGATACTCTCATTAAAGATCCGATAGAAAAG 31551 Query 44033 CATCGA--TTGTTTAATGCGATAGAAA-CAGTACCTGCGATTAAACATAAAGCAGACTGG 44089 || | || |||||||| || |||| || |||| | || || | ||||||| ||| Sbjct 31552 --TCAAATTTATTTAATGCAATTGAAACCATGCCCTGTG-TTCAAAAAAAAGCAGTTTGG 31608 Query 44090 GCCCTTAAATGGATAAATTCAAA-----TGATTCTTTTGGAGAACGACTTGTCGCGTTTG 44144 || || |||||||| || |||| || |||||| ||||| |||| || |||| Sbjct 31609 GCACTAAAATGGATTAA--CAAAGATTGTGCTTCTTTCTCTGAACGTGTTGTTGCATTTG 31666 Query 44145 CAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG-TTAAAGAAA 44203 | | |||||||| ||||| ||||||||||| ||||| || ||||||||| ||||| ||| Sbjct 31667 CTGCAGTGGAAGGAATTTTTTTTTCAGGATCTTTTGCAGCTATATTTTGGCTTAAAAAAA 31726 Score = 131 bits (144), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| |||||||| | ||||||||||||||| | || |||||| ||||||| Sbjct 31105 AGAAAATCCCCGAAGGTTTGTTTTATTTCCAATTCAATATAAAGATATATGGAAAATGTA 31164 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGC 43803 ||| |||| | || || |||||||||| ||||||||||||||| || || || Sbjct 31165 CAAGCAAGCTGAAGCCTCGTTTTGGACAGTTGAAGAAGTTGATTTGGCTGCTGATGCAGT 31224 Query 43804 ACATTGGATTGCA---TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTT 43860 |||||| | | | || || || ||||| ||||||| ||| ||| | || || Sbjct 31225 TCATTGGGAAGAAAAGCTGAAGCCTCAGGAAAAGTATTTTATCTCTCATGTTCTTGCATT 31284 Query 43861 TTTTGCTGCGAGCGACGGGATAGTCAATGAAAA 43893 |||||||| ||||| || || || |||||||| Sbjct 31285 CTTTGCTGCTAGCGATGGAATTGTTAATGAAAA 31317 >seq2702 Length=91333 Score = 114 bits (126), Expect = 1e-20 Identities = 195/281 (69%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 19377 TGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCT--CCCAAA 19434 ||||||||||||||| || | || || | ||| | |||| | | || || ||| Sbjct 63369 TGGAAAAACATTAATGGCTCGTCAAATTGGGAAAATGCTTA--ATGCTTCCGAACCAAAA 63426 Query 19435 ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGA 19494 ||||| |||||||||||||| |||||||||| ||||||| | || ||| ||||| || || Sbjct 63427 ATTGTTAATGGTCCTGAAATTTTAAATAAATTTGTAGGTGAGTCTGAAAAAAATATAAGA 63486 Query 19495 CGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCAC 19554 |||||| || ||||||| || |||||| | || || ||| | | || Sbjct 63487 GTACTGTTTGAAGATGCTGAAGCTGATCAAAAAAAATATGGAGTTAATAGTCCACTCCAT 63546 Query 19555 ATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA------ 19608 || || || | |||||| | || ||||| ||||| ||| |||| ||| | | Sbjct 63547 ATGATCATTTTTGATGAAATAGATGCAATTTGTAAACAACGAGGAACTGCTACAGGCAGT 63606 Query 19609 AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAA 19649 | ||||||| || |||||||| || ||||| | ||||| Sbjct 63607 ACTGGAGTAGCCGATACTGTTGTTAACCAACTATTATCAAA 63647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397354683000580