Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq266 105 6e-18 seq24 102 7e-17 seq12660 87.8 2e-12 >seq266 Length=263831 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||| || || ||||||| | | | | ||||| | ||||||||| Sbjct 46726 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 46785 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| | ||| |||||||| || || | ||| ||||| || ||| || |||| Sbjct 46786 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTC 46845 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||| || | | |||||| || | || || | |||||| || | |||| Sbjct 46846 ACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTT 46905 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||| ||||||||| Sbjct 46906 TTAACAAATATTTGCATA 46923 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||| || || ||||||| | | | | ||||| | ||||||||| Sbjct 46954 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 47013 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| | ||| |||||||| || || | ||| ||||| || ||| || |||| Sbjct 47014 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTC 47073 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||| || | | |||||| || | || || | |||||| || | |||| Sbjct 47074 ACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTT 47133 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||| ||||||||| Sbjct 47134 TTAACAAATATTTGCATA 47151 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| ||||||||||| || || || |||| |||| || | ||||| | ||||||||| Sbjct 46270 GTAGACTCTTTTTGAATGTTATAATCACTCAGTGTTCTGC-CATCTTCTAACTGTTTACC 46328 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || |||| | ||| |||||||| || || | ||| ||||| || ||| || ||| Sbjct 46329 AGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTT 46388 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | ||| || | | ||| || || | || || | |||||| || | ||| Sbjct 46389 CACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGT 46448 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| ||||| ||||||||| Sbjct 46449 TTTAACAAATATTTGCATA 46467 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||| || || ||||||| | | | | ||||| | ||||||||| Sbjct 46498 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 46557 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| | ||| |||||||| || || | ||| ||||| || ||| || |||| Sbjct 46558 GCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTC 46617 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||| || | | ||| || || | || || | |||||| || | |||| Sbjct 46618 ACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTT 46677 Query 27231 TTCACAAAGATTTGCATA 27248 || || || ||||||||| Sbjct 46678 TTAACGAATATTTGCATA 46695 >seq24 Length=448628 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || |||||||||||||||||||| || | |||| | | ||||| | || ||||| Sbjct 62355 GTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTAC-CATCTTCTAATTGCTTACC 62297 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || |||| | |||||||||||| || || | ||| ||||| || || || ||| Sbjct 62296 AGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTAGCTTT 62237 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | || || | | |||||| |||| || || | ||| || || || || Sbjct 62236 TACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGT 62177 Query 27230 TTTCACAAAGATTTGCATAGCTGCT 27254 ||||||||| ||||||||| || || Sbjct 62176 TTTCACAAATATTTGCATACCTCCT 62152 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || |||||||||||||||||||| || | |||| | | ||||| | || ||||| Sbjct 62583 GTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTAC-CATCTTCTAATTGCTTACC 62525 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || |||| | |||||||||||| || || | ||| ||||| || || || ||| Sbjct 62524 AGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTAGCTTT 62465 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | || || | | |||||| |||| ||| || | ||| || || || || Sbjct 62464 TACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTACCAGTAAGGGT 62405 Query 27230 TTTCACAAAGATTTGCATAGCTGCT 27254 ||| ||||| ||||||||| || || Sbjct 62404 TTTTACAAATATTTGCATACCTCCT 62380 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || | ||| || | || | ||| | ||||| ||||||||||| |||||||| || Sbjct 62842 GCCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACT 62783 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | | | || || | || ||||| || |||| | |||||| || || || || Sbjct 62782 GAGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGG 62723 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || || || || || ||| | | | || | || || | | |||||| Sbjct 62722 AATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAAC 62663 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 |||| ||| || | ||| || || || ||||| ||||| ||||||||| || || Sbjct 62662 CTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCATACCTCCT 62608 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||||||||| ||||| || || | |||| | | ||||| | || ||||| Sbjct 62127 GTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTAC-CATCTTCTAATTGCTTACC 62069 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || |||| | ||||||||| || || || | ||| || || || || || ||| Sbjct 62068 AGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTTAGCTTT 62009 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | || || | | |||||| |||| || || | ||| || || || || Sbjct 62008 TACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGT 61949 Query 27230 TTTCACAAAGATTTGCATAGCTGCT 27254 ||||||||| ||||||||| || || Sbjct 61948 TTTCACAAATATTTGCATACCTCCT 61924 >seq12660 Length=10627 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| |||||||||| |||||||| || | |||| | || ||||| | | ||||| Sbjct 9779 GTAGATTCTTTTTGAACATTGTAGTAACTTAATGTT-CTATCATCTTCTAATTCCTTACC 9837 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || |||| | ||||||||| || || | ||| ||||| || || || ||| Sbjct 9838 AGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAACCTTCTTTGTCTTGAATTTTAGCTTT 9897 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | |||| | || || | | ||||||||||| || || | ||| || || || || Sbjct 9898 TACGTTTTCAATTGTATCAGCAGGTTCAACTTCTAATGTGATGGTTTTACCAGTAAGGGT 9957 Query 27230 TTTCACAAAGATTTGCATAGCTGCT 27254 ||||||||| |||| |||| || || Sbjct 9958 TTTCACAAATATTTTCATATCTCCT 9982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424826078378592