Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq4436 84.2 2e-11 >seq4436 Length=60862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 112164 ATGAGGATTCCAAATCTTCACTCCTTTAGATGATA-ACTCTCTTGCATTTGTGGATCCTC 112222 || || |||||| |||| ||| || || || | | | | || ||| || || || | Sbjct 44201 ATTAGAATTCCATATCTGCACACCCTTTTGTGCAAGAATAT-TTCCATCAGTAGAACCAC 44143 Query 112223 TAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCA 112282 |||||||||||| ||| ||||| ||||| |||||||| | || | ||| || |||| | Sbjct 44142 TAATAAACCATAACAACTCTTCAACAACACCTTTCCAAAATACACGTTTGGTTGTTAAAA 44083 Query 112283 GTGGAAAAGAATCATGTAGGGAGAATCTTAGTTGTGGACCAAACAAAGACAATGTTCC 112340 ||||||| || ||| | || ||||| | ||| |||||| | ||| | |||||| Sbjct 44082 GTGGAAATGATTCACGAAGATTGAATCGCATTTGACCACCAAATATAGAAAGTGTTCC 44025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391845687677308