Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24 167 3e-36 seq12660 143 3e-29 seq266 129 7e-25 seq2327 102 9e-17 seq4963 95.1 1e-14 >seq24 Length=448628 Score = 167 bits (184), Expect = 3e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || || || ||| | |||||||| | | | Sbjct 62615 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62674 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || ||||||||||| |||||||| || ||||| ||||||||| Sbjct 62675 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAG 62734 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| |||||||||||||||||||| | ||||||| | || || ||||| || Sbjct 62735 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAGGATGGGAGAACTCTCAGTGACTACAAC 62794 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | ||||| ||||| || |||||||| ||| Sbjct 62795 ATTCAAAAAGAATCTACCCTTCATCTTGTC 62824 Score = 161 bits (178), Expect = 1e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || || || ||| | |||||||| | | | Sbjct 62387 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62446 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || ||||||||||| ||||| || || ||||| ||||| || Sbjct 62447 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62506 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| |||||||||||||||||||| | || |||| | | || || ||||| ||| Sbjct 62507 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62566 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||| |||||||| |||||||| || Sbjct 62567 ATTCAAAAAGAATCCACCCTTCATCTTGT 62595 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || || || || | |||||||| | | | Sbjct 61931 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 61990 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || ||||||||||| |||||||| || ||||| |||||||| Sbjct 61991 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAA 62050 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| |||||||||||||||||||| | || |||| | | || || || || || Sbjct 62051 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGATTACAAC 62110 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||| |||||||| |||||||| || Sbjct 62111 ATTCAAAAAGAATCCACCCTTCATCTTGT 62139 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || || || || | |||||||| | | | Sbjct 62159 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 62218 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || ||||||||||| ||||| || || ||||| ||||| || Sbjct 62219 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62278 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| |||||||||||||||||||| | || |||| | | || || ||||| ||| Sbjct 62279 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62338 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||| |||||||| |||||||| || Sbjct 62339 ATTCAAAAAGAATCCACCCTTCATCTTGT 62367 >seq12660 Length=10627 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| |||| ||||| || || ||||| || || || || || | || ||||| | | | Sbjct 9975 ATGAAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACATTAGAAGTTGAACCTGCT 9916 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || ||||||||||| ||||| || || || |||||||| Sbjct 9915 GATACAATTGAAAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTTTTTTACCAGACCAA 9856 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| ||||||||||||||||| || | || |||||| | || || |||| ||| Sbjct 9855 CAGCGTTTAATTTTTGCTGGTAAGGAATTAGAAGATGATAGAACATTAAGTTACTACAAT 9796 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || ||||| ||||| ||||||||||| || Sbjct 9795 GTTCAAAAAGAATCTACTCTTCATCTTGT 9767 Score = 129 bits (142), Expect = 7e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || || || || | || ||||| | | Sbjct 9522 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACATTAGAAGTTGAACTTGCT 9463 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || ||| |||||| ||||| | || || |||||||| Sbjct 9462 GATACAATTGAAAACGTAAAAGCTCGAATTCAAGACAAAAAAGGTTTTTTACCAGACCAA 9403 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| ||||||||||||||||| || | || |||||| | || || |||| ||| Sbjct 9402 CAGCGTTTAATTTTTGCTGGTAAGGAATTAGAAGATGATAGAACATTAAGTTACTACAAT 9343 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || ||||| ||||| ||||||||||| || Sbjct 9342 GTTCAAAAAGAATCTACTCTTCATCTTGT 9314 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | || ||||| || || ||||| || || || || || | |||||||| | | | Sbjct 9294 ATGAATATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 9235 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || |||| ||||||||||| ||||| || || |||| | ||| || Sbjct 9234 GATACAATTGACAACGTGAAAGCTAAAATTCACGACAAAGAAGGTGTTCCACTAGATCAA 9175 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | |||||||||||||| | | || |||| | || || ||||| ||| Sbjct 9174 CAAAGTTTGTTTTTTGCTGGTAAGGAGTTAGAAAATGAAAGAACTCTCAGTGACTACAAT 9115 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | ||||| ||| |||||| |||| Sbjct 9114 ATTCAAAAAAAATATACTCTTGATCT 9089 >seq266 Length=263831 Score = 129 bits (142), Expect = 7e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || ||||| || ||||| | |||||||| | | | Sbjct 46922 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 46863 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| |||| |||||||| || ||||| || || ||||| ||||| || Sbjct 46862 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 46803 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||| | |||||||||||||| || | || |||| | ||||| ||| || ||||| Sbjct 46802 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGC-GATTATAA 46744 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||| || || || ||||| || || Sbjct 46743 CATTCAAAAAGAGTCAACCCTTCACCTTGT 46714 Score = 129 bits (142), Expect = 7e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || ||||| || ||||| | |||||||| | | | Sbjct 47150 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 47091 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| |||| |||||||| || ||||| || || ||||| ||||| || Sbjct 47090 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 47031 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||| | |||||||||||||| || | || |||| | ||||| ||| || ||||| Sbjct 47030 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGC-GATTATAA 46972 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||| || || || ||||| || || Sbjct 46971 CATTCAAAAAGAGTCAACCCTTCACCTTGT 46942 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || ||||| || || || | ||||| || | | | Sbjct 46466 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46407 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| |||| |||||||| || ||||| || || || || ||||| || Sbjct 46406 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 46347 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | |||||||||||||| || | || |||| | || || || ||||| Sbjct 46346 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACACTGAGTGATTATAAC 46287 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||| || || ||||| |||||||| Sbjct 46286 ATTCAAAAAGAGTCTACTCTCCATCTAGT 46258 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | || ||||| || || || | ||||| || | | | Sbjct 46694 ATGCAAATATTCGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46635 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| |||| |||||||| || ||||| || || || || ||||| || Sbjct 46634 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 46575 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||| | |||||||||||||| || | || |||| | ||||| ||| || ||||| Sbjct 46574 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGC-GATTATAA 46516 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||| || || || ||||| || || Sbjct 46515 CATTCAAAAAGAGTCAACCCTTCACCTTGT 46486 >seq2327 Length=102395 Score = 102 bits (112), Expect = 9e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 || ||| || |||| ||| ||| |||| || | ||| | || ||||||||||| || Sbjct 35048 ATAACTTTTAAGGTCGAGCCAGCAGATACAATCGAGAATGTTAAAGCTAAAATTCAAGAT 34989 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 || || || ||||| ||||||||||| || || || |||||||| ||||| | || ||| Sbjct 34988 AAAGAAGGTATTCCACCAGACCAGCAACGACTTATCTTTGCTGGAAAGCAGTTAGAAGAT 34929 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | | || || || ||||| | |||||||| || || |||||||| || || Sbjct 34928 GGAAGGACATTAAGTGATTATAACATTCAAAAGGAGTCTACACTTCATCTCGTTTT 34873 >seq4963 Length=54722 Score = 95.1 bits (104), Expect = 1e-14 Identities = 178/259 (69%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 |||||| |||||||| | ||| |||||||| || || | || | || ||| |||| Sbjct 22409 AAGACCAATGCCACCAGCCCATTTTGAAATAATTGCGCATTGTTTAACAGTATCAAAAAT 22468 Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT 81617 ||| || || ||||| | | ||| | | || |||||||||||||||||||| || Sbjct 22469 TCCTTCAATACTATCACTCTGCATAGCTAATAAAAAACAGCTTGACATCTGAGGTCTGGG 22528 Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTC 81677 | ||| | |||||| | ||| || | || ||| | || | | |||||| | | Sbjct 22529 GGTGCCAGAATTGAATAATGTAGGAGAGGCATGAGTAAACCATTTTTCTGACATTAAATT 22588 Query 81678 ATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736 ||| ||||| | | || | || ||| ||||| || ||||| | || ||| | ||| | Sbjct 22589 ATATGTTTCTATAGCAGCAT-CAAGATCTTCACCATGTATACCAACAGATACTCTCATCA 22647 Query 81737 ACATGTACTGGGGCGTCTC 81755 |||||| || ||| |||| Sbjct 22648 ACATGTGTTGAGGCCTCTC 22666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570161292345920