Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq266 102 5e-17 seq24 102 5e-17 >seq266 Length=263831 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | || | ||||||||| ||| ||||||||||||||||| Sbjct 46240 CCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTC 46299 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | |||||||| ||||| || ||||| ||||| || || || Sbjct 46300 AGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 46359 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | ||| || | ||| || || | || || Sbjct 46360 ATACCTTCTTTGTCTTGGAT-TTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGAC 46418 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 46419 CTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||| ||||||||||||||||| || |||| | ||||| | |||||||| ||||| Sbjct 46731 CTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAA 46790 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || ||||| ||||| || || || | || || |||||| ||| ||| | ||| || Sbjct 46791 AATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGAT-TTTAGCTTTCACAT 46849 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || || | || || |||| || || ||||| || ||||| ||||| | Sbjct 46850 TGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAA 46909 Query 34694 CAAAAATCTGCAT 34706 |||| || ||||| Sbjct 46910 CAAATATTTGCAT 46922 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||| ||||||||||||||||| || |||| | ||||| | |||||||| ||||| Sbjct 46959 CTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAA 47018 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || ||||| ||||| || || || | || || |||||| ||| ||| | ||| || Sbjct 47019 AATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGAT-TTTAGCTTTCACAT 47077 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || || | || || |||| || || ||||| || ||||| ||||| | Sbjct 47078 TGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAA 47137 Query 34694 CAAAAATCTGCAT 34706 |||| || ||||| Sbjct 47138 CAAATATTTGCAT 47150 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||| ||||||||||||||||| || |||| | ||||| | |||||||| ||||| Sbjct 46503 CTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAA 46562 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || ||||| ||||| || || || | || || |||||| ||| ||| | ||| || Sbjct 46563 AATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGAT-TTTAGCTTTCACAT 46621 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || || | || || |||| || || ||||| || ||||| ||||| | Sbjct 46622 TGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAA 46681 Query 34694 CAAAAATCTGCAT 34706 | || || ||||| Sbjct 46682 CGAATATTTGCAT 46694 >seq24 Length=448628 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | || | ||| || ||| || ||||||||||| ||||| Sbjct 62157 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 62098 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | ||| ||||| ||||| ||||||||||||||||| || || Sbjct 62097 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGA 62038 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | ||| ||| | ||| || || | || || Sbjct 62037 ATACCTTCCTTGTCT-TGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAAC 61979 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| || | ||||||||||| || ||||| Sbjct 61978 CTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||||||||| || || || |||| | | || || | ||| ||||| ||||| Sbjct 62805 TCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAA 62746 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 ||||||||||| ||||| || || | || ||||||||| ||| ||| | ||| ||| | Sbjct 62745 ATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCT-TGAATTTTAGCTTTTACGTT 62687 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| || || | || || || | || || |||||||| || | ||||| || Sbjct 62686 GTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTAC 62627 Query 34695 AAAAATCTGCAT 34706 ||| || ||||| Sbjct 62626 AAATATTTGCAT 62615 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | || | ||| || ||| || |||||||| || || || Sbjct 62385 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62326 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | ||| ||||| ||||| |||||||||||||| || || || Sbjct 62325 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62266 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | ||| ||| | ||| || || | || || Sbjct 62265 ATACCTTCTTTGTCT-TGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAAC 62207 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| || | ||||||||||| || ||||| Sbjct 62206 CTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314649371097428