Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq266 134 3e-26 seq24 122 2e-22 seq2327 114 3e-20 >seq266 Length=263831 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||||||||| ||||||||||| ||||| || |||||| Sbjct 46711 AGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCT 46770 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | ||| || || || || || | |||||||| || || |||| ||||| ||||| Sbjct 46771 TCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCT 46830 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||| || || || || |||| ||||||||| | || || || Sbjct 46831 TGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTT 46890 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| || ||||| | ||||| Sbjct 46891 TTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||||||||| ||||||||||| ||||| || |||||| Sbjct 46939 AGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCT 46998 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | ||| || || || || || | |||||||| || || |||| ||||| ||||| Sbjct 46999 TCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCT 47058 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||| || || || || |||| ||||||||| | || || || Sbjct 47059 TGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTT 47118 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| || ||||| | ||||| Sbjct 47119 TTGCCAGTTAAAGTTTTAACAAATATTTGCAT 47150 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||||||||| ||||||||||| ||||| || |||||| Sbjct 46483 AGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCT 46542 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | ||| || || || || || | |||||||| || || || | ||||| ||||| Sbjct 46543 TCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 46602 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||| || || || || |||| ||| ||||| | ||||| || Sbjct 46603 TGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTT 46662 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| || || || | ||||| Sbjct 46663 TTGCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| ||||||||||| ||||||||||| || || || |||||| Sbjct 46255 AGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTCAGTGTTCTGCCATCT 46314 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | ||| || || || || || | |||||||| || || || | ||||| ||||| Sbjct 46315 TCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 46374 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||| || || || || |||| ||| ||||| | ||||| || Sbjct 46375 TGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTT 46434 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| || ||||| | ||||| Sbjct 46435 TTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 >seq24 Length=448628 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||| |||||||| ||||| ||||| | || || |||||| Sbjct 62142 AGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTACCATCT 62083 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | ||||| || || || || | || |||||||| || |||| ||||||||||| Sbjct 62082 TCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCT 62023 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| ||||| || || || |||| ||||||||| | ||||| || Sbjct 62022 TGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTT 61963 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || ||||| | ||||| Sbjct 61962 TTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| ||||| || || |||||||| ||||| || || || || || ||||| Sbjct 62826 AGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCC 62767 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | ||||| || || || || | || || ||||| || |||| ||||||||||| Sbjct 62766 TCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCT 62707 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| ||||| || || || |||| ||||||||| | |||||| || Sbjct 62706 TGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTT 62647 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| | ||||| Sbjct 62646 TTACCAGTAAGGGTTTTTACAAATATTTGCAT 62615 >seq2327 Length=102395 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||||| || || ||||| || ||||| ||||| ||||||||||| | |||||| Sbjct 34867 AGTCTTAAAACGAGATGAAGTGTAGACTCCTTTTGAATGTTATAATCACTTAATGTCCTT 34926 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| | |||||| || || |||||||| ||||| ||||| || |||| ||||| Sbjct 34927 CCATCTTCTAACTGCTTTCCAGCAAAGATAAGTCGTTGCTGGTCTGGTGGAATACCTTCT 34986 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 || || || || || ||| || || ||||| || || Sbjct 34987 TTATCTTGAATTTTAGCTTTAACATTCTCGATTGTATC 35024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158841363202340