Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq24 134 9e-27 seq266 111 1e-19 seq12660 107 1e-18 >seq24 Length=448628 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || ||||| |||||| | || ||||| | | Sbjct 62387 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62446 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| |||||| |||||||||||| | || ||||||||| Sbjct 62447 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62506 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| ||||| || || ||| | ||||| | | || ||| | || ||||| Sbjct 62507 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62566 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| ||||| | ||| | ||| | | || ||||||| Sbjct 62567 ATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGG 62613 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || ||||| ||||| | || ||||| | | Sbjct 61931 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 61990 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| |||||| ||||| |||||| | || ||||| ||| Sbjct 61991 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAA 62050 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| ||||| || || ||| | ||||| | | || ||| | ||||||||| Sbjct 62051 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGATTACAAC 62110 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| ||||| | ||| | ||| | | || ||||||| Sbjct 62111 ATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGG 62157 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || ||||| ||||| | || ||||| | | Sbjct 62159 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 62218 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| |||||| |||||||||||| | || ||||||||| Sbjct 62219 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62278 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| ||||| || || ||| | ||||| | | || ||| | || ||||| Sbjct 62279 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62338 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| ||||| | ||| | ||| | | || ||||||| Sbjct 62339 ATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGG 62385 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || ||||| |||||| | || ||||| | | Sbjct 62615 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62674 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| |||||| ||||| |||||| | || ||||| || Sbjct 62675 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAG 62734 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| ||||| || || ||| | || || | | ||| | | || |||||| Sbjct 62735 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAGGATGGGAGAACTCTCAGTGACTACAAC 62794 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 62795 ATTCAAAAAGAATCTAC 62811 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 |||| | |||||||||||||| |||||||| ||||| ||||| || | ||||| | | Sbjct 61804 AGGTATTCCGCCAGATCAACAACGTTTAATCTTTGCTGGCAAGCAGTTAGAAGATGGTAG 61863 Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCG 23831 || ||| | ||||||||||| |||||||| ||||| | ||| | ||| | | || | Sbjct 61864 AACATTAAGTGATTACAACATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAG 61923 Query 23832 AGGAGG 23837 |||||| Sbjct 61924 AGGAGG 61929 >seq266 Length=263831 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||| | || || ||||| ||||| | || || || | | Sbjct 46466 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46407 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | |||| | |||||||||||| | || |||||||| Sbjct 46406 GATACTATTGACAATGTGAAAGCTAAAA-TCCAAGACAAAGAAGGTATCCCACCAGATCA 46348 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || ||||| | ||||| | | || | | ||||| || Sbjct 46347 ACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACACTGAGTGATTATAA 46288 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 ||| ||||||||||| || | ||| ||||| | | || |||| |||| Sbjct 46287 CATTCAAAAAGAGTCTACTCTCCATCTAGTTCTTCGATTAAGAGGGGGAT 46238 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||||||||| | || || ||||| ||||| | || || || | | Sbjct 46694 ATGCAAATATTCGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46635 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | |||| | |||||||||||| | || |||||||| Sbjct 46634 GATACTATTGACAATGTGAAAGCTAAAA-TCCAAGACAAAGAAGGTATCCCACCAGATCA 46576 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || ||||| | ||||| | | || | ||||||| || Sbjct 46575 ACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAA 46516 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||||||||| || Sbjct 46515 CATTCAAAAAGAGTCAAC 46498 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||| | || || ||||| || || | || ||||| | | Sbjct 46922 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 46863 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | |||| | |||||||||||| | || |||||||| Sbjct 46862 GATACTATTGACAATGTGAAAGCTAAAA-TCCAAGACAAAGAAGGTATTCCACCAGATCA 46804 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || ||||| | ||||| | | || | ||||||| || Sbjct 46803 ACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAA 46744 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||||||||| || Sbjct 46743 CATTCAAAAAGAGTCAAC 46726 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||| | || || ||||| || || | || ||||| | | Sbjct 47150 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 47091 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | |||| | |||||||||||| | || |||||||| Sbjct 47090 GATACTATTGACAATGTGAAAGCTAAAA-TCCAAGACAAAGAAGGTATTCCACCAGATCA 47032 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || ||||| | ||||| | | || | ||||||| || Sbjct 47031 ACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAA 46972 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||||||||| || Sbjct 46971 CATTCAAAAAGAGTCAAC 46954 >seq12660 Length=10627 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| | || || || |||||||| || || ||||| ||||| | |||||||| | | Sbjct 9975 ATGAAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACATTAGAAGTTGAACCTGCT 9916 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| |||||| |||||||||||| | ||||| ||| Sbjct 9915 GATACAATTGAAAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTTTTTTACCAGACCAA 9856 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| ||||| || || || | ||||| || | || ||| | | ||||| Sbjct 9855 CAGCGTTTAATTTTTGCTGGTAAGGAATTAGAAGATGATAGAACATTAAGTTACTACAAT 9796 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | |||||||| || || | ||| | ||| | | || ||||||| Sbjct 9795 GTTCAAAAAGAATCTACTCTTCATCTTGTTCTTCGATTAAGAGGAGG 9749 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || ||||| ||||| | |||||||| | Sbjct 9522 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACATTAGAAGTTGAACTTGCT 9463 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| |||| |||||| ||||| | ||||| ||| Sbjct 9462 GATACAATTGAAAACGTAAAAGCTCGAATTCAAGACAAAAAAGGTTTTTTACCAGACCAA 9403 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| ||||| || || || | ||||| || | || ||| | | ||||| Sbjct 9402 CAGCGTTTAATTTTTGCTGGTAAGGAATTAGAAGATGATAGAACATTAAGTTACTACAAT 9343 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 | |||||||| || || | ||| | ||| Sbjct 9342 GTTCAAAAAGAATCTACTCTTCATCTTGTT 9313 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/190 (72%), Gaps = 5/190 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || ||||| |||| | || ||||| | | Sbjct 9747 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCTTCACGTTAGAGGTTGAACCTGCT 9688 Query 23671 GACACTGTTGAAATATTAAAA-CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 | || |||| | ||||| | |||| |||| |||||||||||||| || |||||||| Sbjct 9687 AATACAATTGACGAAGTAAAAGCTAAAATTTGC-GACAAAGAAGGTGTTCCACCAGATCA 9629 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||||||| ||| || | | | | ||||| | | || ||| | || | ||| Sbjct 9628 ACAGCGTTTAATTTTTCATGGTATTCTATTAGAAGATGCA---ACATTAAGTGACTGCAA 9572 Query 23790 CATACAAAAA 23799 | | |||||| Sbjct 9571 CGTTCAAAAA 9562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337923436705328