Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq266 93.3 3e-14 >seq266 Length=263831 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | || | ||| | ||||| ||||||||||| || |||||| | Sbjct 46696 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46755 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| || |||||| || ||||| || ||| | || | | |||||| ||| || Sbjct 46756 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 46815 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | ||||||||||| ||||| |||||||| | | | || || | | ||| Sbjct 46816 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATC--AGCAGGTTCAA 46873 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | ||||| |||||||| || || ||||||| ||| |||||||| Sbjct 46874 CCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | || | ||| | ||||| ||||||||||| || |||||| | Sbjct 46924 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46983 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| || |||||| || ||||| || ||| | || | | |||||| ||| || Sbjct 46984 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 47043 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | ||||||||||| ||||| |||||||| | | | || || | | ||| Sbjct 47044 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATC--AGCAGGTTCAA 47101 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | ||||| |||||||| || || ||||||| ||| |||||||| Sbjct 47102 CCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 47150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | || | ||| | ||||| ||||||||||| || |||||| | Sbjct 46468 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46527 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| || |||||| || ||||| || ||| | || | | |||||| ||| || Sbjct 46528 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 46587 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | ||||||||||| ||||| |||||||| | | | || || | | ||| Sbjct 46588 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATC--AGCAGGTTCGA 46645 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | || || |||||||| || || ||||||| || |||||||| Sbjct 46646 CCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409556371829244