Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2421 152 4e-32 >seq2421 Length=99546 Score = 152 bits (168), Expect = 4e-32 Identities = 212/296 (72%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 4623 CTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCG 4682 || |||||||||||||||||||| ||||| || || ||||| || || ||||| || || Sbjct 31727 CTTTTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCA 31668 Query 4683 GCAAACGCTACTAATCGGGACCCGAACGAG---CTGGCTTTGTCTTTAATCCATTTTAAT 4739 ||||| || || | || ||| || | |||||| |||||||||||| | Sbjct 31667 GCAAATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGT---TAATCCATTTTAGT 31611 Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTT 4799 ||||| |||||||| | ||| || || || || | || || |||||||| || Sbjct 31610 GCCCAAACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGAC 31551 Query 4800 TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 ||||| | || |||| ||| ||| || || |||| ||||||||| || || || Sbjct 31550 TTTTCTATCGGATCTTTAATGAGAGTATCAATGAGTAAAGAATACATTTCTGAGTGGATG 31491 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || ||||| ||||| || ||||| ||| ||||||| || ||||||||| Sbjct 31490 TTTTCAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGTTGAACTTC 31435 Score = 125 bits (138), Expect = 6e-24 Identities = 158/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 ||||||| || | |||||| || || || || || || || ||||| || || | ||| Sbjct 31330 AAATCTT---ACAAGGTTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAAC 31274 Query 4982 ATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT---CCAGTGGGGCAAATCTTT 5038 |||||| ||||| |||| ||| | |||||| || |||| ||| || ||| Sbjct 31273 ATGAGAGATAAAATACTTTTCCTGAGGCTTCAGCTTTTCTTCCCAATGAACTGCATCAGC 31214 Query 5039 AGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCA 5098 || ||||||||||||||||| ||||||||||| ||||| |||| |||||||| ||| Sbjct 31213 AGCCAAATCAACTTCTTCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCA 31154 Query 5099 AATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 ||||| ||| ||||| |||| || ||||| || Sbjct 31153 TATATCTTTATATTGAATTGGAAATAAAACAAACCT 31118 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 4455 GTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTA 4514 ||||||||||| ||| |||| ||| || ||| || || | ||||| | |||| | Sbjct 32294 GTCAAAAACTCAATTTCAATAGCTACAGCATCTCGAATAATTTGTTTTACTCGTTCTTCA 32235 Query 4515 GATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCG 4574 || || || ||||| | | | | ||| | ||| ||||| |||||||| ||||| || Sbjct 32234 GAAGGCTTGTTTACAATATGTTTATACATAAGACATGCAAAGTCACAATGTAAACCCTCA 32175 Query 4575 TCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 ||||| || |||| ||| || || || |||| ||| || Sbjct 32174 TCTCTACTGATCAATTCATTTGAGAAAGTTACTCCAGG 32137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426940739185028