Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2421 140 5e-28 seq4963 129 8e-25 >seq2421 Length=99546 Score = 140 bits (154), Expect = 5e-28 Identities = 203/282 (72%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 48218 TTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGC 48277 |||||| ||||||||||| || || |||||||| ||||| || || ||||| || || || Sbjct 31725 TTTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGC 31666 Query 48278 AAATGCGGTAAGTCTCTCTCCGTAACTGGCT---TCGTTGTGTATCCACCGTTGTGCCCA 48334 |||||| || | || | || || || |||| ||||| | ||||||| Sbjct 31665 AAATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCCCA 31606 Query 48335 ATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt--ttt 48392 | | || || || | ||||| ||||| ||||| || |||||||| | || || ||| Sbjct 31605 AACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATA--AATTTGACTTT 31548 Query 48393 tCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATAT 48450 || | |||||||| | |||||| || | ||||| ||||||||| ||||| || | Sbjct 31547 TCTATCGGATCTTTAATGAGAGTATCAATGAGTAAAGA--ATACATTTCTGAGTGGATGT 31490 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 |||||||||| || ||||| || ||||| ||| ||||||| Sbjct 31489 TTTCAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTG 31448 Score = 111 bits (122), Expect = 2e-19 Identities = 154/214 (72%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 48528 TTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT 48587 || ||||| || |||||||| ||||||||||| ||||| | ||||| |||||||| Sbjct 31317 TTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAACATGAGAGATAAAATAC 31258 Query 48588 TTTTCGTTGGAAGTCAG--TTTATTCCAGTCATTGAT----ATCTTTTGATATATCTACT 48641 ||||| | | |||| ||| |||| || ||| ||| | | ||| ||| Sbjct 31257 TTTTCCTGAGGCTTCAGCTTTTCTTCC---CAATGAACTGCATCAGCAGCCAAATCAACT 31201 Query 48642 TCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTAT 48701 |||||| |||||||||| || || || |||| || ||||| ||||||||||| | ||| Sbjct 31200 TCTTCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCATATATCTTTATAT 31141 Query 48702 TGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 || ||||| || | |||||| || ||||||| Sbjct 31140 TGAATTGGAAATAAAACAAACCTTCGGGGATTTT 31107 Score = 104 bits (114), Expect = 3e-17 Identities = 163/230 (71%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCA---TTTCACAATTCATTCCTATAAG 48028 |||||| ||| ||||| |||||| ||||||| | ||| | |||||||||| ||| Sbjct 32370 TCTATCAGCACAAAATTCAATATATGTTTTCATAAGACTTTTA---TTCATTCCTAAAAG 32314 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 | | |||| || ||| || | |||||| ||| |||| |||||||| || || Sbjct 32313 ATCACAGGGTAAAGACTCAGTCAAAAACTCAATTTCAATAGCTACAGCATCTCGAATAAT 32254 Query 48089 CGATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCA 48146 | |||| ||| ||| || || ||||| | |||||| |||| | ||||||| Sbjct 32253 TTGTTTTACTCGTTCTTCAGAAGGCTTGTTTACAATA--TGTTTATACATAAGACATGCA 32196 Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 || |||||||| | ||| ||||||||||| || ||||| || || || || Sbjct 32195 AAGTCACAATGTAAACCCTCATCTCTACTGATCAATTCATTTGAGAAAGT 32146 >seq4963 Length=54722 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 77117 ATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGG 77176 |||||| | ||||||||||||||| | ||||| | || |||||||| | || ||||| Sbjct 15781 ATTAACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAATAAATATTGTTAGTGTATGG 15840 Query 77177 TTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCAC 77236 ||| | ||||||||||| || | ||||||||| ||||| || ||||||||||| || || Sbjct 15841 TTCAATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAGGCTGTTGGCATAGGAGCAAC 15900 Query 77237 CAATAAACTATTTCTGAGACCATG 77260 |||||||| |||| | |||||| Sbjct 15901 TAATAAACTGTTTCGAACACCATG 15924 Score = 127 bits (140), Expect = 3e-24 Identities = 199/282 (71%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAG 78370 ||||| |||| | ||||| | || || || ||||| ||| | ||| | ||| || Sbjct 22443 GCGCATTGTTTAACAGTATCAAAAATTCCTTCAATACTATCACTCTGCATAGCTAATAA- 22501 Query 78371 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATG 78430 ||||||||| ||||| ||| | || || | ||| |||||||| ||||| ||||| Sbjct 22502 AAAACAGCTTGACATCTGAGGTCTGGGGGTGCCAGAATTGAATAATGTAGGAGAGGCATG 22561 Query 78431 CGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTG 78490 |||||||||||||| || | || ||| |||||||| ||||| | || | || Sbjct 22562 AGTAAACCATTTTTCTGACATTAAATTATATGTTTCTATAGCAGCATCAAGATCTTCACC 22621 Query 78491 ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATT 78550 ||| || || || | ||| | ||||||||| || ||||| || ||| | || ||| ||| Sbjct 22622 ATGTATACCAACAGATACTCTCATCAACATGTGTTGAGGCCTCTCAGCAGTTTTACCATT 22681 Query 78551 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAA 78592 ||||| | ||| || ||| |||| | ||| | || | |||| Sbjct 22682 AATTTTTAGCAAATAAGATCTTTCAAGAGTCTAAATATCAAA 22723 Score = 114 bits (126), Expect = 2e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 78060 TGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCAT 78119 || || || || || ||||| ||||| | || | ||| || |||||||||| |||||| Sbjct 22086 TGCTCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAA 22145 Query 78120 GGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTG 78179 || |||| || || || || || ||||| || |||||||||||||| | |||||| Sbjct 22146 GGCTCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTT 22205 Query 78180 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGT 78235 || || |||||| | ||||| ||||| ||||| || || || || |||||||| Sbjct 22206 GCAGTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGT 22261 Score = 113 bits (124), Expect = 6e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 77268 ATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCG 77327 ||||| ||||||| | | ||| | ||| | || || ||| |||| ||| | ||| Sbjct 16061 ATTTTTGCTTTTAGTTCTGCCCAGTTCCACAAATTTGTTGGTGTCACATTCCACATATCA 16120 Query 77328 TATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTT 77387 ||||| || ||||| |||||| | ||| || | || | ||||||| || ||| || Sbjct 16121 TATTGAAGTATTCCTTTACTAATAGGTGACCCTTGGTAACTCTCATAAGTCCCATCTTTT 16180 Query 77388 TCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTA 77447 ||||||| ||||||| ||||| ||||| || |||||||||||||| ||||||| ||| Sbjct 16181 TCAGCTAATTCACAAGATGCTTCTAATGCACCATAATAAATTGTTTCAAAAATCTGTTTA 16240 Query 77448 TTGAG 77452 || || Sbjct 16241 TTAAG 16245 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 |||||||| ||| |||||||| || |||| ||||| | ||| |||||||| || || | Sbjct 23684 CACTAAATTTTTTCTTTGTTTCTTTATGTAAGTTAGAAATAGCAATTCTTGCTGCAAGTA 23743 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 ||||||||| ||||||| ||||| | || |||| |||||| || | | | |||| Sbjct 23744 AAGCATAATCTGGATGTTTAGTAGTCATTGAAGCAGCTACTTCTGCGGCAAGAGTGTCTA 23803 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTC 78905 ||||| ||| || | || || | || ||||||||||| Sbjct 23804 GCTCTACAGTGGTAATTCCTGGGTACATGCCACGAATAACTTTC 23847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694487178842240