Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2421 147 3e-30 seq4963 136 6e-27 >seq2421 Length=99546 Score = 147 bits (162), Expect = 3e-30 Identities = 204/280 (73%), Gaps = 13/280 (5%) Strand=Plus/Minus Query 46708 TTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCG 46767 ||||| |||||||||||||| || |||||||| ||||| || || ||||| || || || Sbjct 31724 TTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGCA 31665 Query 46768 AATGCGACAAGTCTCTCTCCGTAACTGGC---ATCATTATGAATCCACCTTTGAGCCCAA 46824 ||||| |||| | || | || || ||| || | |||||| || | |||||| Sbjct 31664 AATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCCCAA 31605 Query 46825 TCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt---tttt 46881 | || ||||| | ||||| ||||| ||||| || ||||||| | ||| || |||| Sbjct 31604 ACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAA--ATAAATTTGACTTTT 31547 Query 46882 tCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATTTCTGAATGAATGT 46939 ||| |||||||| ||||| || | ||||| |||||||||||| || |||| Sbjct 31546 CTATC-GGATCTTTAATGAGAGTATCAATGAGTAAAGA--ATACATTTCTGAGTGGATGT 31490 Query 46940 TTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 46979 ||||||| || || ||||| || ||||| ||||||||| Sbjct 31489 TTTCAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTC 31450 Score = 102 bits (112), Expect = 1e-16 Identities = 170/240 (71%), Gaps = 12/240 (5%) Strand=Plus/Minus Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCA---TTTCACAATTCATTCCTATGAG 46517 |||||| ||| ||||| ||||| |||||||| | ||| | |||||||||| || Sbjct 32370 TCTATCAGCACAAAATTCAATATATGTTTTCATAAGACTTTTA---TTCATTCCTAAAAG 32314 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CGATATTA 46576 | |||| || ||| || | |||||| |||||||| |||||||| ||| || | Sbjct 32313 ATCACAGGGTAAAGACTCAGTCAAAAACTCAATTTCAATAGCTACAGCATCTCGA-ATAA 32255 Query 46577 TCGATGTTACTGTTTCCTCACTTGG--TGGATGCATCAAATGTTTAAACATTAAACATGC 46634 | | ||||| ||| ||| || || | || | ||||||| |||| | |||||| Sbjct 32254 TTTGTTTTACTCGTTCTTCAGAAGGCTTGTTTACA--ATATGTTTATACATAAGACATGC 32197 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 ||| |||||||| | || ||||||||||| || ||||| || || || || | ||||| Sbjct 32196 AAAGTCACAATGTAAACCCTCATCTCTACTGATCAATTCATTTGAGAAAGTTACTCCAGG 32137 >seq4963 Length=54722 Score = 136 bits (150), Expect = 6e-27 Identities = 246/357 (69%), Gaps = 2/357 (1%) Strand=Plus/Plus Query 76832 CCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCC 76891 |||| |||||||| ||| | | || ||| |||| || || || || || ||| Sbjct 22368 CCAGCTATATAACTCCCAGAAGATCGTATACAGTGAATATGAAGACCAATGCCACCAGCC 22427 Query 76892 ATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCC 76951 ||| || || | || || |||| | || ||| | || || || ||||||||| | Sbjct 22428 CATTTTGAAATAATTGCGCATTGTTTAACAGTATCAAAAATTCCTTCAATACTATCACTC 22487 Query 76952 ATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAA 77010 ||| | ||| || ||||||||| ||||| ||| | || || | ||| || || Sbjct 22488 TGCATAGCTAATAA-AAAACAGCTTGACATCTGAGGTCTGGGGGTGCCAGAATTGAATAA 22546 Query 77011 TGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGC 77070 ||||||||| |||||||| ||||||||||| || | || ||| |||||||| ||| | || Sbjct 22547 TGTAGGAGAGGCATGAGTAAACCATTTTTCTGACATTAAATTATATGTTTCTATAGCAGC 22606 Query 77071 TTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 || | ||| ||| || || |||| || | ||||||||| || ||||| | || Sbjct 22607 ATCAAGATCTTCACCATGTATACCAACAGATACTCTCATCAACATGTGTTGAGGCCTCTC 22666 Query 77131 TACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAA 77187 |||| ||| ||| ||||| | ||| || ||| |||| | ||| | || | |||| Sbjct 22667 AGCAGTTTTACCATTAATTTTTAGCAAATAAGATCTTTCAAGAGTCTAAATATCAAA 22723 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 75712 ATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGG 75771 |||||||| ||||||||||||||| | ||||||| || |||||||| | || ||||| Sbjct 15781 ATTAACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAATAAATATTGTTAGTGTATGG 15840 Query 75772 TTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCAC 75831 ||| | ||||||||||| || | ||||||||| || || || || |||||||| || || Sbjct 15841 TTCAATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAGGCTGTTGGCATAGGAGCAAC 15900 Query 75832 CAATAAACTATTTCTGAGACCATG 75855 |||||||| |||| | |||||| Sbjct 15901 TAATAAACTGTTTCGAACACCATG 15924 Score = 123 bits (136), Expect = 4e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || ||||| ||||| | |||| || || |||||||||| |||||| || Sbjct 22089 TCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAAGGC 22148 Query 76718 TCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCA 76777 |||| || || || || || ||||| || |||||||||||||| | |||||| ||| Sbjct 22149 TCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTTGCA 22208 Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGT 76830 || |||||| | ||||| ||||| ||||| || || || || ||||||||| Sbjct 22209 GTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGT 22261 Score = 122 bits (134), Expect = 1e-22 Identities = 175/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 75863 ATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCG 75922 ||||| ||||||| | | ||| | ||| | || || |||| |||| ||| | ||| Sbjct 16061 ATTTTTGCTTTTAGTTCTGCCCAGTTCCACAAATTTGTTGGTGTCACATTCCACATATCA 16120 Query 75923 TATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTT 75982 ||||| || ||||| || ||| | ||| || | || | || |||||||| || ||| Sbjct 16121 TATTGAAGTATTCCTTTACTAATAGGTGACCCTTGGTAACTCTCATAAGTCCCATCTTTT 16180 Query 75983 TCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 76042 ||||||| ||| ||| || ||||| ||||| |||||||||||||| ||||||| ||| Sbjct 16181 TCAGCTAATTCACAAGATGCTTCTAATGCACCATAATAAATTGTTTCAAAAATCTGTTTA 16240 Query 76043 TTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCT 76102 ||||| |||||| | ||||| ||| | | | | ||| || ||||| ||| Sbjct 16241 TTAAGTAGACTAGCTTCATCAGATTCAAATGGAAATCGCATCAAAATGAACGCATCAGCT 16300 Query 76103 AGTCCCT 76109 || |||| Sbjct 16301 AGACCCT 16307 Score = 96.9 bits (106), Expect = 5e-15 Identities = 197/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 76369 TTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTC 76428 || ||| || || ||| | || || || |||||||| | | || |||||||| || Sbjct 21392 TTTTTGATTACTTTTTCTATTGCAACTATCTTTATAAAGCATGTAAGGGGTTCCAGTCTC 21451 Query 76429 AATCTGTGATTCGATAATAGATTTCCAGACGACTCT--AGCTTTTATTATAGATTTGTAT 76486 |||| ||||| | ||| | ||| | ||| | |||| ||| | | ||| Sbjct 21452 TGTCTGGGATTCTAAAATCGCAAACCACA--ACTTTTGAGCTGGAATTTGTTTTCTATAT 21509 Query 76487 CGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACA-TCATC 76545 ||| || |||||||||| ||| ||| ||| ||||| || ||| |||| ||| | Sbjct 21510 CGCCCTTCGCTTTCATATTTCTGATACAACTCTTCGAATTCTTC-CCCATAACAGTCAGC 21568 Query 76546 CAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTT 76605 |||||||||||||||| |||||||| ||||||||| ||| | || | || | | | Sbjct 21569 TAAACCAGGACATTCATGAGGACACATTAATGACCACATACCTTTCTCTTCTACTCTTCT 21628 Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCT 76653 |||||| || || || | ||| ||| ||| ||| | ||| || | ||| Sbjct 21629 CATAAATAGGTCGGGAACCCAAAGACCAAAAAACAAATCACGAGCTCT 21676 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/175 (72%), Gaps = 8/175 (5%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || || ||||| || |||| | ||| | || || ||| ||| | | || Sbjct 15395 TCCAACCATAAAAATGTATAGCAGTTAAAGTAGAAAAGCTGGGTTCGCCTAAAAATACAT 15454 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTA-TAATGGTC 75562 | | ||| ||||||||||| ||||||||||||||||| || ||||| |||| ||||| | Sbjct 15455 TAAACGATTGACTTTGATCAATGAAAGCTCCTCTATCTGCAGCCATATTTATTAATGAT- 15513 Query 75563 TTTTGAGGAATTTCCCAAATAGTTTTG---AAAACTTGTTTGATATCATCTGGAA 75614 ||||| |||||||| |||||| ||||| ||||||||| | |||| Sbjct 15514 TTTTGCTTTATTTCCCACGCTGTTTTGTACAAAAC---CTTGATATCAGCCGGAA 15565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712748003301120