Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2327 105 2e-17 seq24 98.7 2e-15 seq266 86.0 1e-11 >seq2327 Length=102395 Score = 105 bits (116), Expect = 2e-17 Identities = 117/154 (76%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| | || |||||||| |||||||| ||||| ||||| ||||| ||| || Sbjct 34864 CTGAGTCTTAAAACGAGATGAAGTGTAGACTCCTTTTGAATGTTATAATCACTTAATGTC 34923 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || |||||||||| ||||| || || |||||||| | |||||||| | | || | Sbjct 34924 CTTCCATCTTCTAACTGCTTT--CCAGCAAAGATAAGTCGTTGCTGGTCTGGTGGAATAC 34981 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTC 152035 |||| || ||||||||||| ||| ||| |||| Sbjct 34982 CTTCTTTATCTTGAATTTTAGCTTTAACATTCTC 35015 >seq24 Length=448628 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||||||||| ||||| |||||||| |||||||| || | |||||||||||| Sbjct 62826 AGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCC 62767 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| || || || || || | | ||||||||| | | || |||||||| ||| Sbjct 62766 TCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCT 62707 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| || | || | | || | | || || || | ||| || ||| Sbjct 62706 TGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTT 62647 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || || | ||||| Sbjct 62646 TTACCAGTAAGGGTTTTTACAAATATTTGCAT 62615 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || || |||||||| ||||||||||| ||| ||||| |||||| Sbjct 62142 AGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTACCATCT 62083 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| || || || || || | | ||| ||||| | | || |||||||| ||| Sbjct 62082 TCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCT 62023 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| || | || | | || | | || || || | || || ||| Sbjct 62022 TGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTT 61963 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| || | ||||| Sbjct 61962 TTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 >seq266 Length=263831 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || ||||||||||| ||||| |||||| | ||||| |||||| Sbjct 46483 AGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCT 46542 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || || || || | | || || || | | ||| ||||| || ||| Sbjct 46543 TCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 46602 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||| ||| | || | | || | | || || || | || || ||| Sbjct 46603 TGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTT 46662 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||| || ||||| | ||||| Sbjct 46663 TTGCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153511591890636