Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq24 86.0 5e-12 >seq24 Length=448628 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || ||||| | || | || || ||||| ||| || ||||| ||||| Sbjct 62167 TATTTGCATACCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTT 62108 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 |||||| | | | | || || | ||||| || ||||| || |||||||| || Sbjct 62107 GTAATCACTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTG 62048 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGG 44279 |||| || | ||||||||| | | | | || |||| | ||| | || || || | Sbjct 62047 GTCTGGTGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAG 61989 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | | ||| ||||| | ||| || || || || || ||||| ||||| || |||||||| Sbjct 61988 CAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG--G 44168 || ||||||| || | || || ||||| || || ||||| |||||||| || | Sbjct 62841 CCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTG 62782 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||||| | | | || || | ||||| || ||||| || ||||||||||| |||| | Sbjct 62781 AGAGTT--CTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTG 62724 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCC 44287 | | ||||||||| | | | | || |||| | ||| | || || || || | ||| Sbjct 62723 GAATACCTTCCTTGT-CTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 62665 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || || || || || ||||| || || || |||||||| Sbjct 62664 ACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359898633497172