Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq172076 98.7 1e-15 seq18922 91.5 2e-13 >seq172076 Length=28491 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 24517 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 24576 ||| |||||| || || || ||||| || || || || |||||||| || || || | Sbjct 3336 CTAGATTTTCGTTGACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACGTGAGAAATGA 3395 Query 24577 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTT 24636 | | | ||||| | ||| ||| ||| | | ||||| |||| |||||||| Sbjct 3396 AGTGTCGCTCGTCATCTTTTAACGTATCCCAGTGGCCCAGGTCTTTCGATAGATCCACTT 3455 Query 24637 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 24696 | || | ||||| || || || || |||||||| ||||| | |||||||||||| |||| Sbjct 3456 CCTCTGCAGTCCAGAAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATGTCATGGTATT 3515 Query 24697 GAATTGGAAAAATAACAAA 24715 ||| ||||| | ||||| Sbjct 3516 TAATAGGAAACACCACAAA 3534 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||||||||||||||| |||||||| || ||||| || |||||||| || ||||| || || Sbjct 1233 CATAACTCCCATTTTCTGGTATTCGCCAACACGCTTCTCGAAAAAGTTCGTTTTGCCCTC 1292 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATT 23923 | || || ||||||||||| ||| | || || Sbjct 1293 GAGCGAAATGTTTTCCATGAAGTCGAAGGGGTT 1325 >seq18922 Length=6667 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||||||||||||||| |||||||| || ||||| || |||||||| || ||||| || || Sbjct 4439 CATAACTCCCATTTTCTGGTATTCGCCGACACGCTTCTCGAAAAAGTTCGTTTTGCCCTC 4380 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATT 23923 | || || ||||||||||| ||| |||| || Sbjct 4379 GAGCGAAATGTTTTCCATGAAGTCGAATGGGTT 4347 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 24517 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 24576 ||| |||||| || || || ||||| || || || || |||||||| || || || | Sbjct 1325 CTAGATTTTCGTTGACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACGTGAGAAATGA 1266 Query 24577 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTT 24636 | | || || | |||| ||| ||| | | ||||| |||| |||||||| Sbjct 1265 AGTGCCGCTCCTCATCTTTTAGCGTATCCCAGTGGCCCAGGTCTTTCGATAGATCCACTT 1206 Query 24637 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 24696 | || | ||||| || || || || |||||||| ||||| | |||||||||||| |||| Sbjct 1205 CCTCTGCAGTCCAGAAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATGTCATGGTATT 1146 Query 24697 GAATTGGAAAAATAACAAA 24715 || ||||| | ||||| Sbjct 1145 TTATAGGAAACACCACAAA 1127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592323333681360