Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq172076 89.7 5e-13 >seq172076 Length=28491 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 |||||||| || || || ||||| || || || ||||| | | ||| ||| || | | Sbjct 3341 TTTTCGTTGACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACGTGAGAAATGAAGTGT 3400 Query 16685 ttttCGTTATCTG--AAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTT 16742 |||| |||| || || | ||||| | ||||| |||| ||| || || | Sbjct 3401 CGCTCGTCATCTTTTAACGTATC--CCAGTGGCCCAGGTCTTTCGATAGATCCACTTCCT 3458 Query 16743 CTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAA 16802 || ||||||| ||||| || | |||||||| ||||||| ||| ||||| | ||| || Sbjct 3459 CTGCAGTCCAGAAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATGTCATGGTATTTAA 3518 Query 16803 TAGGAAACACAACATAC 16819 |||||||||| ||| || Sbjct 3519 TAGGAAACACCACAAAC 3535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461422743770200