Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq176294 107 2e-18 seq159113 107 2e-18 seq44860 82.4 8e-11 >seq176294 Length=1487 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || || |||| ||||| || ||||| ||||| || ||||| | |||| Sbjct 1014 CGCAACACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTAAGAGTGCGACCA 955 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || ||||| ||||| ||||||| | ||||| || || || || || |||||| Sbjct 954 TCTTCAAGTTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCAGGGGGAATACCCTCTTTG 895 Query 139670 TCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | |||| |||| | || | ||||| | ||||||||||| | || | Sbjct 894 TCC-TGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTAAT 836 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | || || ||||| || ||||| Sbjct 835 GGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 800 >seq159113 Length=23055 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || || |||| ||||| || ||||| || || || ||||| | |||| Sbjct 22298 CGCAACACCAAATGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTAAGAGTGCGACCA 22239 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || ||||| ||||| |||| || | ||||| || || || || || |||||| Sbjct 22238 TCTTCAAGTTGTTTTCCAGCGAAGATTAGCCTCTGCTGGTCAGGGGGAATACCCTCTTTG 22179 Query 139670 TCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | |||| |||| | || | |||||| | ||||||||||| | || | Sbjct 22178 TCC-TGAATCTTTGCCTTTACATTCTCGATTGTGTCACTTGGCTCCACCTCGAGAGTAAT 22120 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 22119 GGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 22084 >seq44860 Length=53707 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 153663 TCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCG 153722 || ||||| || ||| | || || |||| ||||| |||||||| || || ||| Sbjct 4486 TCATCGGGACTGCTATACTCCACAATCTCCGTGCACAAGTTGCTGCACTTGATGGTGCC- 4428 Query 153723 CAATTACT-TTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCC 153781 ||| | || ||| ||||| || ||||| || ||||||||||| |||||||| || || || Sbjct 4427 CAAGTTCTGTTGGTTGCTCTTCCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCC 4368 Query 153782 GGTTTCGGCTTG 153793 ||| ||| |||| Sbjct 4367 GGTCTCGACTTG 4356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494895725874400