Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq172076 122 1e-22 seq18922 122 1e-22 seq44860 114 2e-20 seq60558 111 2e-19 seq101259 100 4e-16 seq64422 95.1 2e-14 >seq172076 Length=28491 Score = 122 bits (134), Expect = 1e-22 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGAT 125386 ||||| ||||| ||||| || |||| | ||| || ||||| | |||| || Sbjct 2588 CTCTTCAACGCCATCGAAACTATGCCCTG----CGTCAAGCGGAAGGCGGACTGGGCCAT 2533 Query 125387 TCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGT 125446 ||||||| | |||||| ||||||| |||||| || || | || ||||| ||||| Sbjct 2532 CAAGTGGATCAACGACGACGCCTCTTCGTTCGCCGAGCGAGTGATCGCGTTCGCTGCCGT 2473 Query 125447 AGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506 || |||||||| || ||||| ||||| ||||| || |||||||||||||| || | Sbjct 2472 CGAAGGCATCTTTTTCTCGGGCTCGTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGTAT 2413 Query 125507 CATGCCCGGACTGACGCACAGTAACGAGTTTAT 125539 |||||| || || ||| ||| |||||||| || Sbjct 2412 CATGCCAGGGCTCACGTTCAGCAACGAGTTGAT 2380 Score = 104 bits (114), Expect = 3e-17 Identities = 139/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| || | || |||||||| ||| |||||||||||||||| | ||||| || | Sbjct 3527 TGTTTCCTATTAAATACCATGACATCTGGCAAATGTACAAAAAGGCCGAAGCCTCTTTCT 3468 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | || || || ||||| || || |||||| | | ||||| || || | | Sbjct 3467 GGACTGCAGAGGAAGTGGATCTATCGAAAGACCTGGGCCACTGGGATAC---GTTAAAAG 3411 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | |||||| | || || || ||| | ||||| ||||| || | ||| || |||| Sbjct 3410 ATGACGAGCGACACTTCATTTCTCACGTCTTGGCGTTCTTCGCGGCAAGCGACGGCATCG 3351 Query 125176 TCAACGACAATCT 125188 ||||||| ||||| Sbjct 3350 TCAACGAAAATCT 3338 >seq18922 Length=6667 Score = 122 bits (134), Expect = 1e-22 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGAT 125386 ||||| ||||| ||||| || |||| | ||| || ||||| | |||| || Sbjct 1914 CTCTTCAACGCCATCGAAACCATGCCCTG----CGTTAAGCGGAAGGCGGACTGGGCCAT 1969 Query 125387 TCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGT 125446 ||||||| | || ||| ||||||| |||||| || || | || ||||| ||||| Sbjct 1970 CAAGTGGATCAACGATGACGCCTCTTCGTTCGCCGAGCGAGTGATCGCGTTCGCTGCCGT 2029 Query 125447 AGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506 || |||||||| || ||||| || || |||||||| ||||||||||||||||| | Sbjct 2030 CGAAGGCATCTTTTTCTCGGGCTCATTCGCCGCCATCTTCTGGCTCAAGAAGCGCGGTAT 2089 Query 125507 CATGCCCGGACTGACGCACAGTAACGAGTTTAT 125539 |||||| || || ||| ||| |||||||| || Sbjct 2090 CATGCCAGGGCTCACGTTCAGCAACGAGTTGAT 2122 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| || | || |||||||| ||| |||||||||||||||| | ||||| || | Sbjct 1134 TGTTTCCTATAAAATACCATGACATCTGGCAAATGTACAAAAAGGCCGAAGCCTCTTTCT 1193 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | || || || ||||| || || |||||| | | ||||| || | | | | Sbjct 1194 GGACTGCAGAGGAAGTGGATCTATCGAAAGACCTGGGCCACTGGGATACGC---TAAAAG 1250 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || || || ||| | ||||| ||||| || | ||| || |||| Sbjct 1251 ATGAGGAGCGGCACTTCATTTCTCACGTCTTGGCGTTCTTCGCGGCAAGCGACGGCATCG 1310 Query 125176 TCAACGACAATCT 125188 ||||||| ||||| Sbjct 1311 TCAACGAAAATCT 1323 >seq44860 Length=53707 Score = 114 bits (126), Expect = 2e-20 Identities = 117/150 (78%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 97170 GCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACAT 97228 |||| |||| |||||| | ||||| | ||| || || ||||| |||||||| ||||| Sbjct 4323 GCAC-AGAAGCTGTGGTATGCCATTATCGAGGCGCAAGTCGAGACCGGAACTCCCTACAT 4381 Query 97229 TCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGG 97288 ||||||||||| || || || || |||||||||| ||||||||||||||||| | Sbjct 4382 GCTCTACAAGGACGCCTGCAACCGGAAGAGCAACCAACAGAACTTGGGCACCATCAAGTG 4441 Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTA 97318 | ||| |||||||||| ||||| ||||| Sbjct 4442 CAGCAACTTGTGCACGGAGATTGTGGAGTA 4471 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAG 98097 ||||||| ||||| ||||||||| | ||||| | || | ||||| |||||| | | Sbjct 7040 TCTACAAAACTGTGTGGGAGATTTCACAAAAGACCATCATTAAGATGGCGGCCGACCGGG 7099 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTAC 98153 || |||||||| |||||||| ||| ||||| | || |||||||||||| |||| Sbjct 7100 CCGTGTACATTGATCAGAGTCAGTCGCTCAATATTCACATTGCCGAGCCCAACTAC 7155 >seq60558 Length=5495 Score = 111 bits (122), Expect = 2e-19 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 97158 AGACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGG 97216 |||||| || | |||| |||| |||||| | |||||| | ||| || ||||| || || Sbjct 3599 AGACGA-TCAAAGCAC-AGAAGCTGTGGTACGCCATCATCGAGGCCCAAGTAGAAACAGG 3656 Query 97217 AACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGG 97276 || || || || || |||||||| || || || || |||||||||| ||||||| Sbjct 3657 CACGCCCTATATGCTGTACAAGGACGCCTGCAACCGGAAGAGCAACCAACAGAACTTGGG 3716 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTA 97318 |||||||||| || ||| ||||||||||| ||||| ||||| Sbjct 3717 CACCATCAAGTGCAGCAACCTGTGCACGGAGATTGTGGAGTA 3758 >seq101259 Length=14642 Score = 100 bits (110), Expect = 4e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 |||||| |||||| | || | || || || | || ||||| ||||| || || || Sbjct 13089 TTTGCGCATAAAGATCATGCCAGAGCGCGGTCCACGCAGCGTCTTATGCGTCGTCGTAGT 13148 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGC-AA 127219 ||||||||| || |||||||||| | || ||||| | |||| | | || |||| | Sbjct 13149 CACAATGTCGCAGAACTCAAAGGGACTCGGGATGACGCCGGCCGCCA-CTAGTCCGCTTA 13207 Query 127220 TGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTC 127279 ||| || |||||||||| ||| ||| ||| || | || || ||||| ||||| || Sbjct 13208 CGTGCGCCATATCGGCCAACAGGTAGGCGCCCACTTCGTCCGCGATCTCACGGAAGCGCT 13267 Query 127280 TATAGTCCAAGCGCCGAGGATAGCAACTGGTGCC 127313 | ||||||| | || | |||||||| ||||| Sbjct 13268 TGTAGTCCAGGTTGCGCGAGTAGCAACTCGTGCC 13301 >seq64422 Length=7661 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || ||||| ||||||||||| ||||| ||| |||| ||||| | | || |||| Sbjct 2920 GGTGACCTGGGTCCAGTGTACGGCTTCCAATGGCGGCATTCGGGTGCGGAATACAAAGAC 2979 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTC 70186 | || || |||||||| || || ||||||||| || | ||||||||| || Sbjct 2980 ATGTACACGGATTATTCGGGACAAGGAGTTGATCAACTGATGGATGTCATTGACAAAATC 3039 Query 70187 AAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC 70233 || | || || || ||| | |||||| | |||||| |||||||||| Sbjct 3040 AAAAATAACCCGACTGATCGCAGGATCATCATGTGCGCATGGAATCC 3086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739313940741320