Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq159113 172 1e-37 seq88483 172 1e-37 seq26467 172 1e-37 seq176294 163 7e-35 seq177713 127 5e-24 seq118296 116 8e-21 seq166919 113 1e-19 seq37094 113 1e-19 >seq159113 Length=23055 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || ||||| ||||| ||||| | ||| ||||| |||||||||||| Sbjct 22280 GTAGATTCCTTTTGGATATTGTAGTCGCTAAGAGTGCGACCATCTTCAAGTTGTTTTCCA 22221 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || ||||||||||| || ||||| || || || ||||| |||||||||||||| ||| Sbjct 22220 GCGAAGATTAGCCTCTGCTGGTCAGGGGGAATACCCTCTTTGTCCTGAATCTTTGCCTTT 22161 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || || ||||| || ||||| ||||| || || || || Sbjct 22160 ACATTCTCGATTGTGTCACTTGGCTCCACCTCGAGAGTAATGGTCTTGCCGGTCAGGGTC 22101 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 22100 TTGACGAAGATCTGCATTTT 22081 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || | || || || || ||||| || Sbjct 22983 GTGGATTCTTTCTGGATGTTGTAGTCGCTCAGGGTACGTCCATCCTCCAGCTGTTTGCCG 22924 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| || || || || || || ||||| ||||| || || ||||| Sbjct 22923 GCGAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCCTGGATTTTGGCTTTG 22864 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | || || || || || || || || || ||||| || ||||| || || Sbjct 22863 ACGTTTTCGATCGTGTCACTTGGCTCAACTTCGAGGGTGATAGTTTTGCCAGTGAGGGTC 22804 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 22803 TTCACGAAAATCTGCAT 22787 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||||||||| || || |||||| || || | || || Sbjct 22770 AGGACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCACTCAGGGTACGTCCATCC 22711 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| || || || || |||||||| || || || || || || ||||| ||| Sbjct 22710 TCCAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCC 22651 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || ||||| || ||||| | || || || || || || || || || || || Sbjct 22650 TGGATTTTGGCTTTGACGTTTTCGATCGTGTCACTTGGCTCAACTTCGAGGGTGATCGTT 22591 Query 104528 TTACC 104532 || || Sbjct 22590 TTTCC 22586 >seq88483 Length=20907 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||||| || ||||| || || ||||| ||||| | ||| || Sbjct 435 AAGGACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCATC 494 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||| || || || || |||||||| || || ||||| || ||||| || || Sbjct 495 CTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTC 554 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || |||||||| | |||||| || ||||| ||||| ||||| ||||| Sbjct 555 CTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGTTCGACCTCGAGTGTGATAGT 614 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| |||||||||||||| ||||| |||||||| Sbjct 615 CTTTCCAGTAAGTGTTTTCACAAAAATCTGCAT 647 >seq26467 Length=1226 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||||| || ||||| || || ||||| ||||| | |||||| Sbjct 796 AAGGACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTC 737 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||| || || || || |||||||| || || ||||| || ||||| || || Sbjct 736 CTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTC 677 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | |||||| || ||||| ||||| ||||| ||||| Sbjct 676 CTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGTTCGACCTCGAGTGTGATAGT 617 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| |||||||||||||| ||||| |||||||| Sbjct 616 CTTTCCAGTAAGTGTTTTCACAAAAATCTGCAT 584 >seq176294 Length=1487 Score = 163 bits (180), Expect = 7e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || ||||| ||||| | ||| ||||| |||||||||||| Sbjct 996 GTAGATTCCTTTTGGATGTTGTAGTCGCTAAGAGTGCGACCATCTTCAAGTTGTTTTCCA 937 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || ||||| || ||||| || || || ||||| |||||||||||||| ||| Sbjct 936 GCGAAGATCAGTCTCTGCTGGTCAGGGGGAATACCCTCTTTGTCCTGAATCTTTGCCTTT 877 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || ||||| ||||| || || || || Sbjct 876 ACATTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTAATGGTCTTGCCGGTTAGGGTC 817 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 816 TTGACGAAGATCTGCATTTT 797 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||||||||| || || ||||| || || | || || Sbjct 1449 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGCTCAGGGTACGTCCATCC 1390 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || |||||||| || || || || || || ||||| ||| Sbjct 1389 TCAAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCC 1330 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || ||||| || ||||| | || || || || || || || || || || || Sbjct 1329 TGGATTTTGGCTTTGACGTTTTCGATCGTGTCACTTGGCTCGACTTCGAGGGTGATCGTT 1270 Query 104528 TTACC 104532 || || Sbjct 1269 TTTCC 1265 >seq177713 Length=14691 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||||||||| || || ||||| ||||| | || || Sbjct 1769 AAGCACAAGGTGGAGCGTGGATTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATC 1710 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||| ||||| || || |||||||| || || ||||| || ||||| || || Sbjct 1709 CTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 1650 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || || || || | || ||||| || || || || || || || || Sbjct 1649 CTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCAACTTCCAGGGTGATGGT 1590 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || || |||||||| Sbjct 1589 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1557 >seq118296 Length=32322 Score = 116 bits (128), Expect = 8e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| |||||||| || || |||||||||| ||||||| |||||| ||| Sbjct 19420 ATACCTTCCTTATCTTGAATCTTGGCCTTGACATTTTCTATGGTATCGGAAGGTTCCACC 19479 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| || || ||||| ||||| |||||||| Sbjct 19480 TCTAGGGTGATAGTCTTACCCGTGAGGGTTTTCACAAAAATCTGCAT 19526 >seq166919 Length=61529 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT-AGAGTTCTACCGT 104405 ||| || || || | || ||||||||||| || || ||| || | || || | || | Sbjct 59161 AAGGACCAGGTGAAGGGTGGATTCTTTCTGGATGTTGAAGT-AGCTCAGGGTACGTCCAT 59103 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||| || ||||| || || || || |||||||| ||||| || || || || ||| | | Sbjct 59102 CTTCCAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGATCTGGGGGAATGCCCTCTCTGT 59043 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 |||| || || ||||| || || || | || || || || || || || || || |||| Sbjct 59042 CCTGGATTTTGGCTTTGACGTTCTCGATCGTGTCACTTGGCTCAACTTCAAGAGTGATAG 58983 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| || || ||||| || |||||||| Sbjct 58982 TTTTGCCAGTGAGGGTCTTTACGAAAATCTGCAT 58949 >seq37094 Length=33869 Score = 113 bits (124), Expect = 1e-19 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| |||||||| || || |||||||||| |||||| |||||| ||| Sbjct 25391 ATACCTTCCTTATCTTGAATCTTGGCCTTGACATTTTCTATGGTATCAGAAGGTTCCACC 25332 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| || || ||||| ||||| |||||||| Sbjct 25331 TCTAGGGTGATAGTCTTACCCGTGAGGGTTTTCACAAAAATCTGCAT 25285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148618964921156