Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq124561 113 4e-20 seq9938 93.3 4e-14 >seq124561 Length=8077 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 || || |||||||| || || ||||| || || ||||| ||||| | || ||| || Sbjct 6372 CCAGTCGACCCGAACCCACCCGCGCCCCTCTCTGTATCATCCAGAGTGGGCAGCTCCTCG 6313 Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623 | |||||| || |||||||| ||||||||||| || ||||| || |||| ||| Sbjct 6312 AGATCGGGCAAATAGATTCGCTCGCATATCAGCTGCGCAATGCGGTCTCCTTTCTTCACC 6253 Query 5624 TCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCG 5683 |||| || | | |||||| || || || | |||||||||||||| |||||||| | Sbjct 6252 GCGAATTCCTCGGTGCCGAAATTAAAGAGAATAACGCCCACGTTGCCACGGTAGTCCTGG 6193 Query 5684 TCTATCACGCCCGCGCC 5700 || || || || || || Sbjct 6192 TCGATGACACCGGCACC 6176 >seq9938 Length=13986 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 5582 CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCG 5641 |||||||| ||||||||||| || ||||| || |||| ||| |||| || | | |||| Sbjct 27 CGCTCGCATATCAGCTGCGCAATGCGGTCTCCTTTCTTCACCGCGAATTCCTCGGTGCCG 86 Query 5642 AAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700 || || || || | ||||||||||||||| |||||||| ||| || || || || || Sbjct 87 AAATTAAAGAGAATCACGCCCACGTTGCCACGGTAGTCTTGGTCGATGACACCGGCACC 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429066904651784