Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq147173 89.7 3e-13 seq183125 86.0 4e-12 >seq147173 Length=25037 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 25852 AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTC 25911 |||||| ||||||||||| | ||| || |||||||||||||| ||||| || ||| Sbjct 19146 AAGCCCAGATTATCCAAAAACTGTCTCGATCCATTGGCGTCCCAAATCTTGACATTTTTC 19087 Query 25912 TCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCGTGAC 25970 ||||| | ||| |||| ||| ||||| || ||| |||||| || || ||| | | ||| Sbjct 19086 TCGGACAACTCCTTGGCGTTCGTGGATCCCTTGATGAACCAGAGAAGTTCCTCAGCGAC 19028 >seq183125 Length=18962 Score = 86.0 bits (94), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 25838 CTTCCCTGTGCTCA---AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCC 25894 ||||| | ||||| || ||| | ||||||| ||| | || || ||||||||||||| Sbjct 6392 CTTCCTCGCGCTCAGTGAAACCCATTTTATCCAGAAACTGCCTTGATCCATTGGCGTCCC 6451 Query 25895 AGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 25954 | ||||| || |||||||| | ||| |||| ||| ||||| || ||| |||||| | Sbjct 6452 AAATCTTGACATTTTTCTCGGACAACTCCTTGGCGTTCGTGGATCCCTTGATGAACCAGA 6511 Query 25955 GCAGCTCC 25962 | |||||| Sbjct 6512 GAAGCTCC 6519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339356572535211