Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq26467 91.5 1e-13 seq88483 82.4 6e-11 >seq26467 Length=1226 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | || ||||| || || |||||| || |||||||| || || Sbjct 811 ACCACCGCGCAGGCGAAGGACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTC-GC 753 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || ||||||||||||| || ||| || | || | | |||||| || | Sbjct 752 TCAGAGTACGACCGTCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCGGGAG 693 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||||||| || || ||| | | | | |||||||| | | || Sbjct 692 GGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGTTCGA 633 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||| || || || || || || |||||||||||||||||||| Sbjct 632 CCTCGAGTGTGATAGTCTTTCCAGTAAGTGTTTTCACAAAAATCTGCAT 584 >seq88483 Length=20907 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | || ||||| || || |||||| || |||||||| || || Sbjct 420 ACCACCGCGCAGGCGAAGGACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTC-GC 478 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || | ||||||||||| || ||| || | || | | |||||| || | Sbjct 479 TCAGAGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCGGGAG 538 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||||||| || || ||| | | | |||||||| | | || Sbjct 539 GGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGTTCGA 598 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||| || || || || || || |||||||||||||||||||| Sbjct 599 CCTCGAGTGTGATAGTCTTTCCAGTAAGTGTTTTCACAAAAATCTGCAT 647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420283918650407