Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq164541 102 2e-17 >seq164541 Length=2518 Score = 102 bits (112), Expect = 2e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 4474 AAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTT 4533 |||| || |||||| |||| ||||| | | ||||||| | ||| | || ||| Sbjct 9 AAAACAAACTATGTTGTTCATTATAAGGCTCTAAAACAATATGAAGAGCTTGGATTAAAC 68 Query 4534 CTTAAGAAAATACACC-TAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATAT 4592 ||| |||||||| | | || || |||||| || || | |||||||||| |||||| Sbjct 69 ATTACAAAAATACATCGTGGTATT-AAATTTCAGGAAAGTGCCTGGCTCAAACAATATAT 127 Query 4593 CGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAA 4652 ||| ||||||| | || | ||| | ||||| || || ||| |||||| || Sbjct 128 TGATCTAAATACCAACCTCAGAGCAAAAGCAACCAATGATTTTGAGAAAGACTTTTTCAA 187 Query 4653 ATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAA 4700 ||| ||||| ||| | ||||| |||||||||||||| ||| | |||| Sbjct 188 ATTGATGAACAATTCTGTTTTCGGAAAGACGATGGAAAATATTAGAAA 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97755198629478