Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq172076 87.8 2e-12 seq18922 87.8 2e-12 >seq172076 Length=28491 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||||||||||||||| |||||||| || ||||| || |||||||| || ||||| || || Sbjct 1233 CATAACTCCCATTTTCTGGTATTCGCCAACACGCTTCTCGAAAAAGTTCGTTTTGCCCTC 1292 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092 | || || ||||||||||| || || || || Sbjct 1293 GAGCGAAATGTTTTCCATGAAGTCGAAGGGGTT 1325 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || |||||||| | ||||| ||||||||||| || |||||||| |||| ||||| | Sbjct 2922 TAGGTATCGATGAGTAGACTGTACATTTCCGAGTGGATGTTTTCGGTGGCGATCTGGTAG 2981 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || |||||||| | ||| || || | ||| |||||| | | ||||| || Sbjct 2982 CCATAGAAACAGCGAGCTTCCGTCACCTGGACTTCTTTGCTGAATCGCTC 3031 >seq18922 Length=6667 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||||||||||||||| |||||||| || ||||| || |||||||| || ||||| || || Sbjct 4439 CATAACTCCCATTTTCTGGTATTCGCCGACACGCTTCTCGAAAAAGTTCGTTTTGCCCTC 4380 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092 | || || ||||||||||| || || || || Sbjct 4379 GAGCGAAATGTTTTCCATGAAGTCGAATGGGTT 4347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621480104836120